Strain Fitness in Variovorax sp. SCN45 around GFF2157

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2156 and GFF2157 are separated by 0 nucleotidesGFF2157 and GFF2158 are separated by 8 nucleotidesGFF2158 and GFF2159 overlap by 4 nucleotidesGFF2159 and GFF2160 overlap by 1 nucleotides GFF2156 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 209,412 to 210,911 GFF2156 GFF2157 - UPF0301 protein YqgE, at 210,912 to 211,511 GFF2157 GFF2158 - Putative pre-16S rRNA nuclease YqgF, at 211,520 to 211,969 GFF2158 GFF2159 - Pyrimidine operon regulatory protein PyrR, at 211,966 to 212,463 GFF2159 GFF2160 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 212,463 to 213,425 GFF2160 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 209.962 kb on + strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.963 kb on - strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.203 kb on - strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.265 kb on - strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.427 kb on + strand, within GFF2156at 210.428 kb on - strand, within GFF2156at 210.428 kb on - strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.445 kb on + strand, within GFF2156at 210.446 kb on - strand, within GFF2156at 210.446 kb on - strand, within GFF2156at 210.446 kb on - strand, within GFF2156at 210.502 kb on + strand, within GFF2156at 210.502 kb on + strand, within GFF2156at 210.502 kb on + strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.503 kb on - strand, within GFF2156at 210.780 kb on + strandat 210.781 kb on - strandat 210.781 kb on - strandat 210.817 kb on + strandat 210.817 kb on + strandat 210.818 kb on - strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.877 kb on + strandat 210.878 kb on - strandat 210.878 kb on - strandat 210.878 kb on - strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.911 kb on + strandat 210.912 kb on - strandat 210.912 kb on - strandat 210.912 kb on - strandat 210.912 kb on - strandat 210.912 kb on - strandat 211.005 kb on + strand, within GFF2157at 211.005 kb on + strand, within GFF2157at 211.005 kb on + strand, within GFF2157at 211.006 kb on - strand, within GFF2157at 211.006 kb on - strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.224 kb on + strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.225 kb on - strand, within GFF2157at 211.335 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.443 kb on + strand, within GFF2157at 211.996 kb on + strandat 211.996 kb on + strandat 211.996 kb on + strandat 211.997 kb on - strandat 211.997 kb on - strandat 212.018 kb on + strand, within GFF2159at 212.019 kb on - strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.245 kb on + strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.246 kb on - strand, within GFF2159at 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.461 kb on + strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.462 kb on - strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.469 kb on + strandat 212.470 kb on - strandat 212.470 kb on - strandat 212.470 kb on - strandat 212.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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209,962 + GFF2156 0.37 -1.0
209,962 + GFF2156 0.37 -0.8
209,962 + GFF2156 0.37 +0.7
209,963 - GFF2156 0.37 +0.1
210,004 + GFF2156 0.39 +0.3
210,004 + GFF2156 0.39 -2.0
210,004 + GFF2156 0.39 -0.3
210,005 - GFF2156 0.40 -0.8
210,005 - GFF2156 0.40 +0.4
210,005 - GFF2156 0.40 +1.0
210,031 + GFF2156 0.41 -0.1
210,031 + GFF2156 0.41 -0.7
210,031 + GFF2156 0.41 -0.2
210,032 - GFF2156 0.41 -0.2
210,032 - GFF2156 0.41 +1.2
210,032 - GFF2156 0.41 -0.1
210,160 + GFF2156 0.50 +0.5
210,160 + GFF2156 0.50 -1.1
210,160 + GFF2156 0.50 -0.8
210,160 + GFF2156 0.50 -1.2
210,160 + GFF2156 0.50 -2.2
210,160 + GFF2156 0.50 -0.1
210,160 + GFF2156 0.50 +0.2
210,161 - GFF2156 0.50 +0.9
210,161 - GFF2156 0.50 -0.1
210,161 - GFF2156 0.50 -0.2
210,161 - GFF2156 0.50 -1.0
210,161 - GFF2156 0.50 +0.5
210,161 - GFF2156 0.50 +0.4
210,161 - GFF2156 0.50 +0.9
210,203 - GFF2156 0.53 -0.2
210,264 + GFF2156 0.57 -1.7
210,264 + GFF2156 0.57 -0.1
210,264 + GFF2156 0.57 +0.7
210,264 + GFF2156 0.57 -0.8
210,265 - GFF2156 0.57 -1.5
210,427 + GFF2156 0.68 +0.1
210,427 + GFF2156 0.68 -0.4
210,427 + GFF2156 0.68 -0.7
210,427 + GFF2156 0.68 -0.4
210,427 + GFF2156 0.68 +0.0
210,427 + GFF2156 0.68 +0.2
210,428 - GFF2156 0.68 -2.7
210,428 - GFF2156 0.68 +1.0
210,445 + GFF2156 0.69 -0.3
210,445 + GFF2156 0.69 +0.7
210,445 + GFF2156 0.69 -0.0
210,445 + GFF2156 0.69 -0.6
210,445 + GFF2156 0.69 +0.3
210,446 - GFF2156 0.69 +1.4
210,446 - GFF2156 0.69 -0.6
210,446 - GFF2156 0.69 +0.9
210,502 + GFF2156 0.73 +0.1
210,502 + GFF2156 0.73 +0.3
210,502 + GFF2156 0.73 +0.0
210,503 - GFF2156 0.73 -0.1
210,503 - GFF2156 0.73 -0.1
210,503 - GFF2156 0.73 +0.0
210,503 - GFF2156 0.73 -0.3
210,503 - GFF2156 0.73 -0.4
210,503 - GFF2156 0.73 +0.6
210,503 - GFF2156 0.73 +0.1
210,503 - GFF2156 0.73 +1.9
210,503 - GFF2156 0.73 -0.1
210,503 - GFF2156 0.73 +0.9
210,780 + -0.1
210,781 - +0.9
210,781 - +0.3
210,817 + +0.3
210,817 + -0.5
210,818 - +0.2
210,877 + -1.3
210,877 + -0.7
210,877 + -0.2
210,877 + -0.5
210,877 + -0.4
210,877 + +0.7
210,878 - -1.8
210,878 - -2.3
210,878 - -0.5
210,911 + -0.1
210,911 + +1.1
210,911 + -0.3
210,911 + -0.6
210,911 + +0.1
210,911 + -0.1
210,912 - -0.2
210,912 - -0.2
210,912 - -0.7
210,912 - +0.7
210,912 - -1.5
211,005 + GFF2157 0.15 -0.5
211,005 + GFF2157 0.15 -0.4
211,005 + GFF2157 0.15 -1.6
211,006 - GFF2157 0.16 +1.1
211,006 - GFF2157 0.16 -0.5
211,224 + GFF2157 0.52 -1.0
211,224 + GFF2157 0.52 -0.5
211,224 + GFF2157 0.52 -0.2
211,224 + GFF2157 0.52 -1.1
211,225 - GFF2157 0.52 +0.5
211,225 - GFF2157 0.52 -0.8
211,225 - GFF2157 0.52 -0.6
211,335 + GFF2157 0.70 -1.5
211,443 + GFF2157 0.89 +0.5
211,443 + GFF2157 0.89 -0.4
211,443 + GFF2157 0.89 -2.1
211,443 + GFF2157 0.89 -0.1
211,996 + +1.0
211,996 + -1.3
211,996 + -0.2
211,997 - -0.0
211,997 - -0.1
212,018 + GFF2159 0.10 +0.1
212,019 - GFF2159 0.11 +1.0
212,245 + GFF2159 0.56 -1.0
212,245 + GFF2159 0.56 -0.5
212,245 + GFF2159 0.56 +0.7
212,245 + GFF2159 0.56 +0.2
212,246 - GFF2159 0.56 -1.0
212,246 - GFF2159 0.56 -0.3
212,246 - GFF2159 0.56 -0.4
212,246 - GFF2159 0.56 -0.8
212,246 - GFF2159 0.56 +0.0
212,461 + -0.2
212,461 + +0.1
212,461 + +1.0
212,461 + -0.2
212,461 + +1.8
212,461 + -0.7
212,461 + +0.6
212,461 + +0.5
212,461 + -2.4
212,461 + +0.8
212,462 - -0.2
212,462 - -0.7
212,462 - -0.5
212,462 - +0.4
212,462 - -0.3
212,462 - +0.3
212,462 - +0.3
212,462 - -0.3
212,462 - -1.5
212,462 - -0.3
212,462 - +0.4
212,462 - -0.5
212,469 + -0.7
212,469 + -1.5
212,469 + +1.4
212,469 + +0.3
212,469 + +0.3
212,470 - +0.0
212,470 - -0.8
212,470 - +0.8
212,470 - +0.2

Or see this region's nucleotide sequence