Strain Fitness in Variovorax sp. SCN45 around GFF2132

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2131 and GFF2132 overlap by 1 nucleotidesGFF2132 and GFF2133 are separated by 40 nucleotides GFF2131 - Putative protease, at 179,503 to 181,353 GFF2131 GFF2132 - Thiol:disulfide interchange protein DsbC, at 181,353 to 182,075 GFF2132 GFF2133 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 182,116 to 183,243 GFF2133 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 180.353 kb on + strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.368 kb on + strand, within GFF2131at 180.368 kb on + strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.426 kb on - strand, within GFF2131at 180.426 kb on - strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.551 kb on + strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.821 kb on + strand, within GFF2131at 180.822 kb on - strand, within GFF2131at 180.822 kb on - strand, within GFF2131at 180.822 kb on - strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.175 kb on + strandat 181.175 kb on + strandat 181.176 kb on - strandat 181.176 kb on - strandat 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.628 kb on - strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.690 kb on + strand, within GFF2132at 181.690 kb on + strand, within GFF2132at 181.691 kb on - strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.885 kb on + strand, within GFF2132at 181.885 kb on + strand, within GFF2132at 181.885 kb on + strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.919 kb on - strand, within GFF2132at 182.052 kb on + strandat 182.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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180,353 + GFF2131 0.46 -0.5
180,353 + GFF2131 0.46 +0.5
180,353 + GFF2131 0.46 -1.1
180,368 + GFF2131 0.47 -0.7
180,368 + GFF2131 0.47 +0.9
180,369 - GFF2131 0.47 +1.3
180,369 - GFF2131 0.47 -1.5
180,369 - GFF2131 0.47 -0.2
180,369 - GFF2131 0.47 -0.8
180,369 - GFF2131 0.47 -0.9
180,425 + GFF2131 0.50 -0.1
180,425 + GFF2131 0.50 -1.5
180,425 + GFF2131 0.50 +0.3
180,425 + GFF2131 0.50 -1.2
180,425 + GFF2131 0.50 -0.1
180,425 + GFF2131 0.50 +1.1
180,425 + GFF2131 0.50 -0.5
180,426 - GFF2131 0.50 -0.3
180,426 - GFF2131 0.50 -0.2
180,458 + GFF2131 0.52 -0.0
180,458 + GFF2131 0.52 -1.7
180,458 + GFF2131 0.52 -1.3
180,458 + GFF2131 0.52 +0.3
180,459 - GFF2131 0.52 +0.5
180,459 - GFF2131 0.52 -0.6
180,459 - GFF2131 0.52 -0.2
180,459 - GFF2131 0.52 +0.0
180,459 - GFF2131 0.52 +0.8
180,551 + GFF2131 0.57 -1.5
180,585 - GFF2131 0.58 -0.0
180,585 - GFF2131 0.58 -2.1
180,585 - GFF2131 0.58 -2.1
180,585 - GFF2131 0.58 -0.2
180,821 + GFF2131 0.71 -0.0
180,822 - GFF2131 0.71 -1.1
180,822 - GFF2131 0.71 -1.1
180,822 - GFF2131 0.71 -0.2
181,040 + GFF2131 0.83 -0.0
181,040 + GFF2131 0.83 +0.4
181,040 + GFF2131 0.83 +0.1
181,040 + GFF2131 0.83 -0.9
181,041 - GFF2131 0.83 -2.0
181,041 - GFF2131 0.83 +1.4
181,041 - GFF2131 0.83 -0.4
181,041 - GFF2131 0.83 -0.6
181,041 - GFF2131 0.83 -1.8
181,041 - GFF2131 0.83 -0.6
181,175 + -0.3
181,175 + -0.2
181,176 - -0.8
181,176 - +1.1
181,459 + GFF2132 0.15 -0.4
181,459 + GFF2132 0.15 -0.0
181,459 + GFF2132 0.15 -1.2
181,459 + GFF2132 0.15 +0.1
181,459 + GFF2132 0.15 +1.0
181,459 + GFF2132 0.15 -0.6
181,460 - GFF2132 0.15 -0.0
181,460 - GFF2132 0.15 +0.2
181,460 - GFF2132 0.15 -1.1
181,460 - GFF2132 0.15 -0.6
181,628 - GFF2132 0.38 +1.9
181,639 + GFF2132 0.40 -0.5
181,639 + GFF2132 0.40 +1.9
181,639 + GFF2132 0.40 +0.2
181,639 + GFF2132 0.40 -0.3
181,640 - GFF2132 0.40 -1.1
181,640 - GFF2132 0.40 -0.4
181,640 - GFF2132 0.40 -0.5
181,640 - GFF2132 0.40 -0.9
181,640 - GFF2132 0.40 -0.2
181,690 + GFF2132 0.47 +0.8
181,690 + GFF2132 0.47 -0.2
181,691 - GFF2132 0.47 -0.2
181,864 + GFF2132 0.71 -0.6
181,864 + GFF2132 0.71 -0.3
181,864 + GFF2132 0.71 -0.3
181,864 + GFF2132 0.71 -0.5
181,864 + GFF2132 0.71 +0.0
181,865 - GFF2132 0.71 -1.0
181,865 - GFF2132 0.71 -1.4
181,865 - GFF2132 0.71 -1.0
181,865 - GFF2132 0.71 -0.7
181,865 - GFF2132 0.71 -0.2
181,865 - GFF2132 0.71 -0.9
181,865 - GFF2132 0.71 -1.0
181,865 - GFF2132 0.71 -0.8
181,865 - GFF2132 0.71 -0.7
181,885 + GFF2132 0.74 -0.7
181,885 + GFF2132 0.74 -0.1
181,885 + GFF2132 0.74 -2.3
181,886 - GFF2132 0.74 -0.9
181,886 - GFF2132 0.74 +0.2
181,886 - GFF2132 0.74 -0.2
181,886 - GFF2132 0.74 -0.7
181,919 - GFF2132 0.78 +0.1
182,052 + -0.3
182,053 - -0.6

Or see this region's nucleotide sequence