Strain Fitness in Variovorax sp. SCN45 around GFF2039

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2038 and GFF2039 overlap by 14 nucleotidesGFF2039 and GFF2040 are separated by 88 nucleotides GFF2038 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 86,598 to 87,581 GFF2038 GFF2039 - Transcriptional regulator, AcrR family, at 87,568 to 88,137 GFF2039 GFF2040 - Putative drug efflux protein, at 88,226 to 89,476 GFF2040 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1 2 3at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.911 kb on - strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.973 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.327 kb on + strand, within GFF2038at 87.328 kb on - strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.459 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 88.148 kb on + strandat 88.185 kb on + strandat 88.186 kb on - strandat 88.186 kb on - strandat 88.439 kb on + strand, within GFF2040at 88.719 kb on + strand, within GFF2040at 88.719 kb on + strand, within GFF2040

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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86,868 + GFF2038 0.27 +0.3
86,868 + GFF2038 0.27 -0.9
86,868 + GFF2038 0.27 -0.1
86,868 + GFF2038 0.27 -0.4
86,868 + GFF2038 0.27 -0.9
86,869 - GFF2038 0.28 -0.2
86,869 - GFF2038 0.28 -0.2
86,869 - GFF2038 0.28 -0.3
86,869 - GFF2038 0.28 +0.6
86,910 + GFF2038 0.32 +1.9
86,910 + GFF2038 0.32 -1.4
86,910 + GFF2038 0.32 -2.5
86,910 + GFF2038 0.32 +0.2
86,911 - GFF2038 0.32 -0.7
86,952 + GFF2038 0.36 -0.7
86,952 + GFF2038 0.36 +0.1
86,952 + GFF2038 0.36 -0.4
86,952 + GFF2038 0.36 -0.4
86,952 + GFF2038 0.36 -0.5
86,952 + GFF2038 0.36 -0.8
86,952 + GFF2038 0.36 +0.1
86,952 + GFF2038 0.36 -0.7
86,952 + GFF2038 0.36 -0.9
86,952 + GFF2038 0.36 +0.9
86,953 - GFF2038 0.36 -1.8
86,953 - GFF2038 0.36 -1.4
86,953 - GFF2038 0.36 -0.0
86,953 - GFF2038 0.36 -2.2
86,953 - GFF2038 0.36 -1.5
86,953 - GFF2038 0.36 +0.3
86,953 - GFF2038 0.36 -0.8
86,953 - GFF2038 0.36 -0.3
86,953 - GFF2038 0.36 +1.1
86,973 + GFF2038 0.38 +1.0
87,066 + GFF2038 0.48 +0.5
87,066 + GFF2038 0.48 -0.1
87,066 + GFF2038 0.48 -0.6
87,066 + GFF2038 0.48 -0.1
87,066 + GFF2038 0.48 +0.6
87,066 + GFF2038 0.48 -1.8
87,066 + GFF2038 0.48 +1.0
87,067 - GFF2038 0.48 +0.3
87,067 - GFF2038 0.48 +1.0
87,067 - GFF2038 0.48 -0.1
87,067 - GFF2038 0.48 -0.1
87,067 - GFF2038 0.48 -1.6
87,153 + GFF2038 0.56 -1.0
87,153 + GFF2038 0.56 +0.5
87,153 + GFF2038 0.56 +0.0
87,153 + GFF2038 0.56 +0.1
87,153 + GFF2038 0.56 -0.3
87,153 + GFF2038 0.56 +0.9
87,153 + GFF2038 0.56 -0.7
87,154 - GFF2038 0.57 -0.2
87,154 - GFF2038 0.57 -0.1
87,154 - GFF2038 0.57 -1.2
87,154 - GFF2038 0.57 -0.7
87,154 - GFF2038 0.57 +0.4
87,327 + GFF2038 0.74 -1.6
87,328 - GFF2038 0.74 +0.4
87,438 + GFF2038 0.85 -0.5
87,438 + GFF2038 0.85 -1.0
87,438 + GFF2038 0.85 +0.7
87,438 + GFF2038 0.85 -0.1
87,438 + GFF2038 0.85 -1.4
87,438 + GFF2038 0.85 -0.9
87,438 + GFF2038 0.85 +0.8
87,439 - GFF2038 0.85 -0.1
87,439 - GFF2038 0.85 +0.2
87,439 - GFF2038 0.85 -1.0
87,439 - GFF2038 0.85 +0.1
87,459 + GFF2038 0.88 +0.9
87,477 + GFF2038 0.89 -0.6
87,477 + GFF2038 0.89 -0.6
87,477 + GFF2038 0.89 -0.4
87,477 + GFF2038 0.89 -0.4
87,477 + GFF2038 0.89 -0.7
87,477 + GFF2038 0.89 -0.7
87,477 + GFF2038 0.89 +0.3
87,478 - GFF2038 0.89 +0.5
87,478 - GFF2038 0.89 -1.2
87,478 - GFF2038 0.89 +1.1
87,478 - GFF2038 0.89 +0.3
87,478 - GFF2038 0.89 +0.1
87,478 - GFF2038 0.89 -0.3
87,478 - GFF2038 0.89 -0.4
87,495 + +0.2
87,495 + -0.5
87,495 + +0.4
87,495 + -0.2
87,495 + -1.3
87,495 + -0.6
87,496 - -0.4
87,496 - -0.0
87,496 - -1.8
87,496 - +3.5
87,496 - -0.7
87,496 - +0.5
87,496 - +0.1
87,496 - -0.6
87,496 - -1.8
87,822 + GFF2039 0.45 -0.3
87,822 + GFF2039 0.45 -1.3
87,822 + GFF2039 0.45 +0.9
87,822 + GFF2039 0.45 +0.6
87,822 + GFF2039 0.45 -0.8
87,822 + GFF2039 0.45 -1.9
87,822 + GFF2039 0.45 +0.3
87,822 + GFF2039 0.45 -0.4
87,823 - GFF2039 0.45 -0.3
87,823 - GFF2039 0.45 +0.2
87,823 - GFF2039 0.45 -0.3
87,823 - GFF2039 0.45 -0.1
87,823 - GFF2039 0.45 +0.1
87,823 - GFF2039 0.45 -0.4
87,823 - GFF2039 0.45 +1.3
87,974 + GFF2039 0.71 -0.4
87,974 + GFF2039 0.71 +1.3
87,974 + GFF2039 0.71 -0.6
87,974 + GFF2039 0.71 -1.2
87,974 + GFF2039 0.71 -0.1
87,974 + GFF2039 0.71 -0.9
87,975 - GFF2039 0.71 -1.3
87,975 - GFF2039 0.71 -1.9
87,975 - GFF2039 0.71 -1.9
87,975 - GFF2039 0.71 +0.3
88,148 + +0.3
88,185 + +0.3
88,186 - +0.3
88,186 - -0.1
88,439 + GFF2040 0.17 +0.8
88,719 + GFF2040 0.39 +0.4
88,719 + GFF2040 0.39 -0.9

Or see this region's nucleotide sequence