Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2018 and GFF2019 overlap by 4 nucleotides GFF2019 and GFF2020 are separated by 33 nucleotides GFF2020 and GFF2021 are separated by 127 nucleotides
GFF2018 - Transcriptional regulator, IclR family, at 62,378 to 63,127
GFF2018
GFF2019 - FIG00976956: hypothetical protein, at 63,124 to 63,519
GFF2019
GFF2020 - BUG/TctC family periplasmic protein, at 63,553 to 64,575
GFF2020
GFF2021 - FIG00538369: hypothetical protein, at 64,703 to 65,926
GFF2021
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.558 kb on + strand, within GFF2018 at 62.558 kb on + strand, within GFF2018 at 62.559 kb on - strand, within GFF2018 at 62.559 kb on - strand, within GFF2018 at 62.559 kb on - strand, within GFF2018 at 62.562 kb on - strand, within GFF2018 at 62.562 kb on - strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.712 kb on - strand, within GFF2018 at 62.747 kb on + strand, within GFF2018 at 62.747 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.113 kb on + strand at 63.151 kb on + strand at 63.152 kb on - strand at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.473 kb on - strand, within GFF2019 at 63.473 kb on - strand, within GFF2019 at 63.473 kb on - strand, within GFF2019 at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.698 kb on + strand, within GFF2020 at 63.698 kb on + strand, within GFF2020 at 63.865 kb on + strand, within GFF2020 at 63.865 kb on + strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.931 kb on + strand, within GFF2020 at 63.932 kb on - strand, within GFF2020 at 63.932 kb on - strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.151 kb on - strand, within GFF2020 at 64.151 kb on - strand, within GFF2020 at 64.633 kb on + strand at 64.701 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.769 kb on + strand at 64.871 kb on - strand, within GFF2021 at 64.988 kb on + strand, within GFF2021 at 64.989 kb on - strand, within GFF2021 at 64.989 kb on - strand, within GFF2021 at 65.031 kb on - strand, within GFF2021 at 65.066 kb on + strand, within GFF2021 at 65.066 kb on + strand, within GFF2021 at 65.067 kb on - strand, within GFF2021 at 65.085 kb on - strand, within GFF2021 at 65.102 kb on + strand, within GFF2021 at 65.102 kb on + strand, within GFF2021 at 65.420 kb on + strand, within GFF2021 at 65.421 kb on - strand, within GFF2021 at 65.456 kb on + strand, within GFF2021 at 65.457 kb on - strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 62,558 + GFF2018 0.24 -0.1 62,558 + GFF2018 0.24 -0.9 62,559 - GFF2018 0.24 +0.5 62,559 - GFF2018 0.24 +0.5 62,559 - GFF2018 0.24 +0.3 62,562 - GFF2018 0.25 +1.1 62,562 - GFF2018 0.25 -1.1 62,711 + GFF2018 0.44 +0.1 62,711 + GFF2018 0.44 -1.4 62,711 + GFF2018 0.44 -1.4 62,711 + GFF2018 0.44 +0.0 62,711 + GFF2018 0.44 -0.4 62,711 + GFF2018 0.44 -1.5 62,712 - GFF2018 0.45 -0.1 62,747 + GFF2018 0.49 -0.6 62,747 + GFF2018 0.49 +0.4 63,011 + GFF2018 0.84 -0.0 63,011 + GFF2018 0.84 -0.8 63,011 + GFF2018 0.84 -0.6 63,011 + GFF2018 0.84 -0.5 63,012 - GFF2018 0.85 +1.1 63,012 - GFF2018 0.85 -0.4 63,012 - GFF2018 0.85 -0.4 63,012 - GFF2018 0.85 -1.1 63,113 + +1.0 63,151 + -0.0 63,152 - -0.8 63,331 + GFF2019 0.52 -0.6 63,331 + GFF2019 0.52 -0.4 63,331 + GFF2019 0.52 -1.0 63,331 + GFF2019 0.52 +0.4 63,331 + GFF2019 0.52 -0.6 63,331 + GFF2019 0.52 +0.3 63,331 + GFF2019 0.52 -0.3 63,332 - GFF2019 0.53 -1.3 63,332 - GFF2019 0.53 -0.8 63,332 - GFF2019 0.53 -1.2 63,332 - GFF2019 0.53 +0.5 63,332 - GFF2019 0.53 -0.2 63,332 - GFF2019 0.53 +0.1 63,332 - GFF2019 0.53 -2.1 63,472 + GFF2019 0.88 -0.7 63,472 + GFF2019 0.88 -0.3 63,472 + GFF2019 0.88 -0.4 63,472 + GFF2019 0.88 +0.2 63,473 - GFF2019 0.88 -0.5 63,473 - GFF2019 0.88 +0.7 63,473 - GFF2019 0.88 +1.1 63,533 + +0.0 63,533 + -0.9 63,533 + -1.6 63,533 + -1.1 63,533 + -1.2 63,533 + +0.3 63,533 + -0.6 63,533 + +0.0 63,533 + +0.2 63,534 - -0.4 63,534 - +1.6 63,534 - -0.1 63,534 - -0.0 63,534 - -0.8 63,534 - +1.4 63,534 - +0.1 63,534 - -0.6 63,534 - -0.1 63,534 - -1.6 63,534 - +0.1 63,534 - -0.8 63,534 - -1.0 63,534 - -1.0 63,698 + GFF2020 0.14 -1.2 63,698 + GFF2020 0.14 -0.0 63,865 + GFF2020 0.30 -0.7 63,865 + GFF2020 0.30 -0.3 63,866 - GFF2020 0.31 -0.3 63,866 - GFF2020 0.31 -0.3 63,866 - GFF2020 0.31 -1.9 63,866 - GFF2020 0.31 -0.7 63,931 + GFF2020 0.37 -0.0 63,932 - GFF2020 0.37 +0.4 63,932 - GFF2020 0.37 +0.5 64,069 + GFF2020 0.50 -0.4 64,069 + GFF2020 0.50 +1.1 64,069 + GFF2020 0.50 -0.5 64,069 + GFF2020 0.50 -0.6 64,070 - GFF2020 0.51 -0.1 64,070 - GFF2020 0.51 +0.3 64,070 - GFF2020 0.51 -0.9 64,070 - GFF2020 0.51 -1.3 64,070 - GFF2020 0.51 -1.3 64,150 + GFF2020 0.58 +1.5 64,150 + GFF2020 0.58 -0.5 64,150 + GFF2020 0.58 +0.3 64,150 + GFF2020 0.58 +0.4 64,150 + GFF2020 0.58 -1.6 64,151 - GFF2020 0.58 +0.3 64,151 - GFF2020 0.58 -1.3 64,633 + +1.6 64,701 + -0.9 64,708 + -0.1 64,708 + -0.7 64,708 + -1.3 64,708 + -0.6 64,708 + -2.0 64,708 + -0.8 64,709 - -1.1 64,709 - -0.4 64,709 - -0.1 64,709 - +0.9 64,709 - +0.3 64,709 - -0.3 64,709 - +1.1 64,709 - +0.3 64,709 - -0.2 64,709 - +0.6 64,709 - -0.0 64,709 - +0.9 64,769 + +1.1 64,871 - GFF2021 0.14 -0.9 64,988 + GFF2021 0.23 -0.2 64,989 - GFF2021 0.23 -2.0 64,989 - GFF2021 0.23 -0.1 65,031 - GFF2021 0.27 -0.8 65,066 + GFF2021 0.30 -0.5 65,066 + GFF2021 0.30 -0.0 65,067 - GFF2021 0.30 -1.0 65,085 - GFF2021 0.31 +0.1 65,102 + GFF2021 0.33 -2.8 65,102 + GFF2021 0.33 -0.5 65,420 + GFF2021 0.59 -0.5 65,421 - GFF2021 0.59 -0.8 65,456 + GFF2021 0.62 +0.3 65,457 - GFF2021 0.62 -0.9 65,567 + GFF2021 0.71 -0.4 65,567 + GFF2021 0.71 +0.4 65,567 + GFF2021 0.71 +0.5 65,567 + GFF2021 0.71 -0.9 65,568 - GFF2021 0.71 -0.4 65,568 - GFF2021 0.71 -0.4 65,568 - GFF2021 0.71 -0.8 65,568 - GFF2021 0.71 -0.8
Or see this region's nucleotide sequence