Strain Fitness in Variovorax sp. SCN45 around GFF2018

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2017 and GFF2018 are separated by 93 nucleotidesGFF2018 and GFF2019 overlap by 4 nucleotidesGFF2019 and GFF2020 are separated by 33 nucleotides GFF2017 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 61,364 to 62,284 GFF2017 GFF2018 - Transcriptional regulator, IclR family, at 62,378 to 63,127 GFF2018 GFF2019 - FIG00976956: hypothetical protein, at 63,124 to 63,519 GFF2019 GFF2020 - BUG/TctC family periplasmic protein, at 63,553 to 64,575 GFF2020 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1at 61.379 kb on + strandat 61.649 kb on + strand, within GFF2017at 61.649 kb on + strand, within GFF2017at 61.649 kb on + strand, within GFF2017at 61.650 kb on - strand, within GFF2017at 61.650 kb on - strand, within GFF2017at 61.650 kb on - strand, within GFF2017at 61.650 kb on - strand, within GFF2017at 61.695 kb on - strand, within GFF2017at 61.695 kb on - strand, within GFF2017at 61.727 kb on + strand, within GFF2017at 62.007 kb on - strand, within GFF2017at 62.007 kb on - strand, within GFF2017at 62.007 kb on - strand, within GFF2017at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.528 kb on + strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.529 kb on - strand, within GFF2018at 62.534 kb on + strand, within GFF2018at 62.534 kb on + strand, within GFF2018at 62.534 kb on + strand, within GFF2018at 62.534 kb on + strand, within GFF2018at 62.534 kb on + strand, within GFF2018at 62.534 kb on + strand, within GFF2018at 62.534 kb on + strand, within GFF2018at 62.535 kb on - strand, within GFF2018at 62.535 kb on - strand, within GFF2018at 62.535 kb on - strand, within GFF2018at 62.535 kb on - strand, within GFF2018at 62.558 kb on + strand, within GFF2018at 62.558 kb on + strand, within GFF2018at 62.559 kb on - strand, within GFF2018at 62.559 kb on - strand, within GFF2018at 62.559 kb on - strand, within GFF2018at 62.562 kb on - strand, within GFF2018at 62.562 kb on - strand, within GFF2018at 62.711 kb on + strand, within GFF2018at 62.711 kb on + strand, within GFF2018at 62.711 kb on + strand, within GFF2018at 62.711 kb on + strand, within GFF2018at 62.711 kb on + strand, within GFF2018at 62.711 kb on + strand, within GFF2018at 62.712 kb on - strand, within GFF2018at 62.747 kb on + strand, within GFF2018at 62.747 kb on + strand, within GFF2018at 63.011 kb on + strand, within GFF2018at 63.011 kb on + strand, within GFF2018at 63.011 kb on + strand, within GFF2018at 63.011 kb on + strand, within GFF2018at 63.012 kb on - strand, within GFF2018at 63.012 kb on - strand, within GFF2018at 63.012 kb on - strand, within GFF2018at 63.012 kb on - strand, within GFF2018at 63.113 kb on + strandat 63.151 kb on + strandat 63.152 kb on - strandat 63.331 kb on + strand, within GFF2019at 63.331 kb on + strand, within GFF2019at 63.331 kb on + strand, within GFF2019at 63.331 kb on + strand, within GFF2019at 63.331 kb on + strand, within GFF2019at 63.331 kb on + strand, within GFF2019at 63.331 kb on + strand, within GFF2019at 63.332 kb on - strand, within GFF2019at 63.332 kb on - strand, within GFF2019at 63.332 kb on - strand, within GFF2019at 63.332 kb on - strand, within GFF2019at 63.332 kb on - strand, within GFF2019at 63.332 kb on - strand, within GFF2019at 63.332 kb on - strand, within GFF2019at 63.472 kb on + strand, within GFF2019at 63.472 kb on + strand, within GFF2019at 63.472 kb on + strand, within GFF2019at 63.472 kb on + strand, within GFF2019at 63.473 kb on - strand, within GFF2019at 63.473 kb on - strand, within GFF2019at 63.473 kb on - strand, within GFF2019at 63.533 kb on + strandat 63.533 kb on + strandat 63.533 kb on + strandat 63.533 kb on + strandat 63.533 kb on + strandat 63.533 kb on + strandat 63.533 kb on + strandat 63.533 kb on + strandat 63.533 kb on + strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.534 kb on - strandat 63.698 kb on + strand, within GFF2020at 63.698 kb on + strand, within GFF2020at 63.865 kb on + strand, within GFF2020at 63.865 kb on + strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.931 kb on + strand, within GFF2020at 63.932 kb on - strand, within GFF2020at 63.932 kb on - strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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61,379 + +1.5
61,649 + GFF2017 0.31 -1.3
61,649 + GFF2017 0.31 -0.7
61,649 + GFF2017 0.31 +0.3
61,650 - GFF2017 0.31 +0.8
61,650 - GFF2017 0.31 +0.7
61,650 - GFF2017 0.31 +0.6
61,650 - GFF2017 0.31 +0.7
61,695 - GFF2017 0.36 -0.7
61,695 - GFF2017 0.36 -0.1
61,727 + GFF2017 0.39 -0.6
62,007 - GFF2017 0.70 -1.6
62,007 - GFF2017 0.70 -0.1
62,007 - GFF2017 0.70 -0.8
62,528 + GFF2018 0.20 -1.1
62,528 + GFF2018 0.20 -0.1
62,528 + GFF2018 0.20 +0.0
62,528 + GFF2018 0.20 -0.2
62,528 + GFF2018 0.20 -0.2
62,528 + GFF2018 0.20 -0.2
62,528 + GFF2018 0.20 -1.1
62,528 + GFF2018 0.20 -0.3
62,528 + GFF2018 0.20 -0.4
62,528 + GFF2018 0.20 -0.4
62,528 + GFF2018 0.20 -0.8
62,528 + GFF2018 0.20 -0.3
62,528 + GFF2018 0.20 -1.0
62,528 + GFF2018 0.20 -0.0
62,528 + GFF2018 0.20 +0.4
62,528 + GFF2018 0.20 -1.0
62,528 + GFF2018 0.20 +0.2
62,529 - GFF2018 0.20 -0.3
62,529 - GFF2018 0.20 -0.4
62,529 - GFF2018 0.20 -0.8
62,529 - GFF2018 0.20 +1.1
62,529 - GFF2018 0.20 -0.7
62,529 - GFF2018 0.20 -1.0
62,529 - GFF2018 0.20 +0.4
62,529 - GFF2018 0.20 -0.3
62,529 - GFF2018 0.20 +0.1
62,529 - GFF2018 0.20 +0.3
62,529 - GFF2018 0.20 -0.9
62,529 - GFF2018 0.20 -1.2
62,529 - GFF2018 0.20 +1.1
62,529 - GFF2018 0.20 -0.2
62,534 + GFF2018 0.21 -0.1
62,534 + GFF2018 0.21 -0.3
62,534 + GFF2018 0.21 -1.3
62,534 + GFF2018 0.21 +0.7
62,534 + GFF2018 0.21 -0.2
62,534 + GFF2018 0.21 -0.7
62,534 + GFF2018 0.21 -1.4
62,535 - GFF2018 0.21 -0.4
62,535 - GFF2018 0.21 -1.2
62,535 - GFF2018 0.21 +0.5
62,535 - GFF2018 0.21 -0.6
62,558 + GFF2018 0.24 -0.1
62,558 + GFF2018 0.24 -0.9
62,559 - GFF2018 0.24 +0.5
62,559 - GFF2018 0.24 +0.5
62,559 - GFF2018 0.24 +0.3
62,562 - GFF2018 0.25 +1.1
62,562 - GFF2018 0.25 -1.1
62,711 + GFF2018 0.44 +0.1
62,711 + GFF2018 0.44 -1.4
62,711 + GFF2018 0.44 -1.4
62,711 + GFF2018 0.44 +0.0
62,711 + GFF2018 0.44 -0.4
62,711 + GFF2018 0.44 -1.5
62,712 - GFF2018 0.45 -0.1
62,747 + GFF2018 0.49 -0.6
62,747 + GFF2018 0.49 +0.4
63,011 + GFF2018 0.84 -0.0
63,011 + GFF2018 0.84 -0.8
63,011 + GFF2018 0.84 -0.6
63,011 + GFF2018 0.84 -0.5
63,012 - GFF2018 0.85 +1.1
63,012 - GFF2018 0.85 -0.4
63,012 - GFF2018 0.85 -0.4
63,012 - GFF2018 0.85 -1.1
63,113 + +1.0
63,151 + -0.0
63,152 - -0.8
63,331 + GFF2019 0.52 -0.6
63,331 + GFF2019 0.52 -0.4
63,331 + GFF2019 0.52 -1.0
63,331 + GFF2019 0.52 +0.4
63,331 + GFF2019 0.52 -0.6
63,331 + GFF2019 0.52 +0.3
63,331 + GFF2019 0.52 -0.3
63,332 - GFF2019 0.53 -1.3
63,332 - GFF2019 0.53 -0.8
63,332 - GFF2019 0.53 -1.2
63,332 - GFF2019 0.53 +0.5
63,332 - GFF2019 0.53 -0.2
63,332 - GFF2019 0.53 +0.1
63,332 - GFF2019 0.53 -2.1
63,472 + GFF2019 0.88 -0.7
63,472 + GFF2019 0.88 -0.3
63,472 + GFF2019 0.88 -0.4
63,472 + GFF2019 0.88 +0.2
63,473 - GFF2019 0.88 -0.5
63,473 - GFF2019 0.88 +0.7
63,473 - GFF2019 0.88 +1.1
63,533 + +0.0
63,533 + -0.9
63,533 + -1.6
63,533 + -1.1
63,533 + -1.2
63,533 + +0.3
63,533 + -0.6
63,533 + +0.0
63,533 + +0.2
63,534 - -0.4
63,534 - +1.6
63,534 - -0.1
63,534 - -0.0
63,534 - -0.8
63,534 - +1.4
63,534 - +0.1
63,534 - -0.6
63,534 - -0.1
63,534 - -1.6
63,534 - +0.1
63,534 - -0.8
63,534 - -1.0
63,534 - -1.0
63,698 + GFF2020 0.14 -1.2
63,698 + GFF2020 0.14 -0.0
63,865 + GFF2020 0.30 -0.7
63,865 + GFF2020 0.30 -0.3
63,866 - GFF2020 0.31 -0.3
63,866 - GFF2020 0.31 -0.3
63,866 - GFF2020 0.31 -1.9
63,866 - GFF2020 0.31 -0.7
63,931 + GFF2020 0.37 -0.0
63,932 - GFF2020 0.37 +0.4
63,932 - GFF2020 0.37 +0.5
64,069 + GFF2020 0.50 -0.4
64,069 + GFF2020 0.50 +1.1
64,069 + GFF2020 0.50 -0.5
64,069 + GFF2020 0.50 -0.6
64,070 - GFF2020 0.51 -0.1
64,070 - GFF2020 0.51 +0.3
64,070 - GFF2020 0.51 -0.9
64,070 - GFF2020 0.51 -1.3
64,070 - GFF2020 0.51 -1.3

Or see this region's nucleotide sequence