Strain Fitness in Variovorax sp. SCN45 around GFF1968

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
10,690	+		GFF1967	0.64	+0.2
10,691	-		GFF1967	0.64	+0.9
10,691	-		GFF1967	0.64	-0.7
10,753	+		GFF1967	0.69	-0.3
10,873	+		GFF1967	0.78	-0.9
10,873	+		GFF1967	0.78	+1.0
10,873	+		GFF1967	0.78	-2.6
10,873	+		GFF1967	0.78	+2.1
10,874	-		GFF1967	0.78	-1.2
10,874	-		GFF1967	0.78	+0.1
10,924	+		GFF1967	0.81	-0.6
10,924	+		GFF1967	0.81	-0.4
10,924	+		GFF1967	0.81	-0.5
10,924	+		GFF1967	0.81	-1.6
10,925	-		GFF1967	0.81	+0.6
10,925	-		GFF1967	0.81	-0.6
10,925	-		GFF1967	0.81	-1.3
11,346	+		GFF1968	0.19	+1.3
11,448	+		GFF1968	0.32	+1.2
11,448	+		GFF1968	0.32	-0.7
11,448	+		GFF1968	0.32	-0.7
11,448	+		GFF1968	0.32	+0.8
11,448	+		GFF1968	0.32	-0.7
11,449	-		GFF1968	0.32	-2.3
11,517	+		GFF1968	0.41	-0.2
11,517	+		GFF1968	0.41	+0.3
11,518	-		GFF1968	0.41	+0.7
11,518	-		GFF1968	0.41	-1.0
11,853	+		GFF1968	0.82	-0.6
11,853	+		GFF1968	0.82	-0.8
11,853	+		GFF1968	0.82	-0.4
11,853	+		GFF1968	0.82	-0.9
11,871	+		GFF1968	0.85	-0.8
11,871	+		GFF1968	0.85	-0.7
11,944	-				-0.4
12,102	-		GFF1969	0.13	-0.8
12,130	+		GFF1969	0.16	-0.9
12,484	+		GFF1969	0.59	+0.3
12,484	+		GFF1969	0.59	-1.1
12,484	+		GFF1969	0.59	-0.7
12,484	+		GFF1969	0.59	+0.7
12,484	+		GFF1969	0.59	-0.2
12,485	-		GFF1969	0.59	-1.1
12,485	-		GFF1969	0.59	-0.2
12,485	-		GFF1969	0.59	-0.1
12,485	-		GFF1969	0.59	-0.0
12,738	-		GFF1969	0.89	-0.1
12,933	+				+2.1
12,934	-				+0.0
12,934	-				-0.7
12,934	-				-0.5
12,934	-				-0.5
12,993	+		GFF1970	0.10	+0.9
12,993	+		GFF1970	0.10	-0.5
12,993	+		GFF1970	0.10	+0.4
12,993	+		GFF1970	0.10	-0.0
12,993	+		GFF1970	0.10	-0.4
12,993	+		GFF1970	0.10	+0.6
12,994	-		GFF1970	0.10	+0.3
12,994	-		GFF1970	0.10	-0.0