Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1895 and GFF1896 are separated by 21 nucleotides GFF1896 and GFF1897 overlap by 4 nucleotides GFF1897 and GFF1898 are separated by 122 nucleotides GFF1898 and GFF1899 overlap by 6 nucleotides
GFF1895 - Aminoglycoside N(6')-acetyltransferase (EC 2.3.1.82) => AAC(6')-Ic,f,g,h,j,k,l,r-z / Uncharacterized hydrolase, at 570,027 to 570,536
GFF1895
GFF1896 - Two-component transcriptional response regulator, LuxR family, at 570,558 to 571,172
GFF1896
GFF1897 - Two-component system sensor histidine kinase/response regulator hybrid, at 571,169 to 573,343
GFF1897
GFF1898 - Phosphoserine phosphatase (EC 3.1.3.3), at 573,466 to 574,119
GFF1898
GFF1899 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 574,114 to 577,656
GFF1899
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 570.298 kb on + strand, within GFF1895 at 570.298 kb on + strand, within GFF1895 at 570.559 kb on + strand at 570.645 kb on + strand, within GFF1896 at 571.084 kb on + strand, within GFF1896 at 571.659 kb on - strand, within GFF1897 at 571.912 kb on + strand, within GFF1897 at 571.975 kb on - strand, within GFF1897 at 572.065 kb on - strand, within GFF1897 at 572.178 kb on + strand, within GFF1897 at 572.179 kb on - strand, within GFF1897 at 572.179 kb on - strand, within GFF1897 at 572.353 kb on - strand, within GFF1897 at 572.533 kb on - strand, within GFF1897 at 572.599 kb on - strand, within GFF1897 at 572.658 kb on + strand, within GFF1897 at 572.659 kb on - strand, within GFF1897 at 572.860 kb on - strand, within GFF1897 at 572.899 kb on - strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 573.030 kb on + strand, within GFF1897 at 573.031 kb on - strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.126 kb on + strand at 573.126 kb on + strand at 573.126 kb on + strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.998 kb on - strand, within GFF1898 at 574.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 570,298 + GFF1895 0.53 +0.5 570,298 + GFF1895 0.53 +0.6 570,559 + -1.5 570,645 + GFF1896 0.14 -0.5 571,084 + GFF1896 0.86 +0.3 571,659 - GFF1897 0.23 +0.1 571,912 + GFF1897 0.34 -0.2 571,975 - GFF1897 0.37 -0.6 572,065 - GFF1897 0.41 -0.7 572,178 + GFF1897 0.46 +0.5 572,179 - GFF1897 0.46 +0.4 572,179 - GFF1897 0.46 -0.3 572,353 - GFF1897 0.54 -1.5 572,533 - GFF1897 0.63 -0.4 572,599 - GFF1897 0.66 -0.5 572,658 + GFF1897 0.68 +0.1 572,659 - GFF1897 0.69 +0.6 572,860 - GFF1897 0.78 -1.4 572,899 - GFF1897 0.80 -1.0 572,988 + GFF1897 0.84 -1.4 572,988 + GFF1897 0.84 -0.0 572,988 + GFF1897 0.84 -0.3 573,030 + GFF1897 0.86 -0.2 573,031 - GFF1897 0.86 -0.3 573,120 + GFF1897 0.90 -0.1 573,120 + GFF1897 0.90 -0.6 573,121 - GFF1897 0.90 -1.3 573,121 - GFF1897 0.90 +0.3 573,121 - GFF1897 0.90 -1.1 573,126 + -1.9 573,126 + -0.0 573,126 + +0.4 573,127 - +1.7 573,127 - +0.3 573,127 - -0.8 573,127 - +0.0 573,127 - -0.9 573,127 - -0.5 573,823 + GFF1898 0.55 -0.9 573,823 + GFF1898 0.55 +0.7 573,823 + GFF1898 0.55 -0.6 573,991 + GFF1898 0.80 +0.5 573,991 + GFF1898 0.80 -1.1 573,991 + GFF1898 0.80 -0.5 573,991 + GFF1898 0.80 -0.6 573,992 - GFF1898 0.80 +0.8 573,992 - GFF1898 0.80 -0.2 573,998 - GFF1898 0.81 -2.2 574,223 + +0.3
Or see this region's nucleotide sequence