Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1890 and GFF1891 are separated by 127 nucleotides GFF1891 and GFF1892 are separated by 167 nucleotides GFF1892 and GFF1893 are separated by 71 nucleotides GFF1893 and GFF1894 are separated by 30 nucleotides
GFF1890 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 566,473 to 567,855
GFF1890
GFF1891 - Transcriptional regulator, GntR family, at 567,983 to 568,726
GFF1891
GFF1892 - no description, at 568,894 to 569,037
GFF1892
GFF1893 - FIG00466861: hypothetical protein, at 569,109 to 569,516
GFF1893
GFF1894 - no description, at 569,547 to 569,975
GFF1894
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 567.029 kb on + strand, within GFF1890 at 567.029 kb on + strand, within GFF1890 at 567.029 kb on + strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.335 kb on + strand, within GFF1890 at 567.530 kb on + strand, within GFF1890 at 567.731 kb on + strand at 567.869 kb on + strand at 567.870 kb on - strand at 567.915 kb on + strand at 567.928 kb on - strand at 567.947 kb on - strand at 568.103 kb on + strand, within GFF1891 at 568.103 kb on + strand, within GFF1891 at 568.103 kb on + strand, within GFF1891 at 568.104 kb on - strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.424 kb on + strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.425 kb on - strand, within GFF1891 at 568.439 kb on + strand, within GFF1891 at 568.440 kb on - strand, within GFF1891 at 568.508 kb on + strand, within GFF1891 at 568.509 kb on - strand, within GFF1891 at 568.628 kb on + strand, within GFF1891 at 568.629 kb on - strand, within GFF1891 at 568.864 kb on + strand at 568.865 kb on - strand at 568.895 kb on + strand at 568.896 kb on - strand at 568.982 kb on + strand, within GFF1892 at 568.983 kb on - strand, within GFF1892 at 569.062 kb on + strand at 569.063 kb on - strand at 569.122 kb on - strand at 569.266 kb on + strand, within GFF1893 at 569.279 kb on - strand, within GFF1893 at 569.307 kb on + strand, within GFF1893 at 569.307 kb on + strand, within GFF1893 at 569.359 kb on - strand, within GFF1893 at 569.407 kb on + strand, within GFF1893 at 569.407 kb on + strand, within GFF1893 at 569.431 kb on + strand, within GFF1893 at 569.431 kb on + strand, within GFF1893 at 569.541 kb on + strand at 569.541 kb on + strand at 569.542 kb on - strand at 569.542 kb on - strand at 569.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 567,029 + GFF1890 0.40 -0.2 567,029 + GFF1890 0.40 +0.1 567,029 + GFF1890 0.40 +0.2 567,030 - GFF1890 0.40 +0.0 567,030 - GFF1890 0.40 +0.3 567,030 - GFF1890 0.40 +0.6 567,030 - GFF1890 0.40 +1.8 567,030 - GFF1890 0.40 -0.9 567,335 + GFF1890 0.62 -0.2 567,530 + GFF1890 0.76 -0.4 567,731 + +0.4 567,869 + +0.2 567,870 - -0.4 567,915 + -0.3 567,928 - +0.4 567,947 - -0.3 568,103 + GFF1891 0.16 -0.9 568,103 + GFF1891 0.16 +1.4 568,103 + GFF1891 0.16 -1.5 568,104 - GFF1891 0.16 -1.0 568,424 + GFF1891 0.59 -1.8 568,424 + GFF1891 0.59 -1.0 568,424 + GFF1891 0.59 -1.0 568,424 + GFF1891 0.59 -0.7 568,425 - GFF1891 0.59 +0.6 568,425 - GFF1891 0.59 -0.2 568,425 - GFF1891 0.59 -0.5 568,425 - GFF1891 0.59 -1.3 568,425 - GFF1891 0.59 +0.5 568,425 - GFF1891 0.59 +0.1 568,439 + GFF1891 0.61 -0.5 568,440 - GFF1891 0.61 +1.8 568,508 + GFF1891 0.71 -0.8 568,509 - GFF1891 0.71 -0.4 568,628 + GFF1891 0.87 +0.8 568,629 - GFF1891 0.87 +0.3 568,864 + -0.5 568,865 - +0.5 568,895 + +0.7 568,896 - -1.9 568,982 + GFF1892 0.61 +0.2 568,983 - GFF1892 0.62 -1.6 569,062 + -1.1 569,063 - +0.3 569,122 - -0.3 569,266 + GFF1893 0.38 +0.0 569,279 - GFF1893 0.42 -0.5 569,307 + GFF1893 0.49 -1.0 569,307 + GFF1893 0.49 +0.8 569,359 - GFF1893 0.61 +1.2 569,407 + GFF1893 0.73 -0.7 569,407 + GFF1893 0.73 +0.5 569,431 + GFF1893 0.79 -0.5 569,431 + GFF1893 0.79 +0.4 569,541 + -1.2 569,541 + -0.7 569,542 - -0.4 569,542 - +1.0 569,542 - -0.5
Or see this region's nucleotide sequence