Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1871 and GFF1872 are separated by 36 nucleotides GFF1872 and GFF1873 are separated by 4 nucleotides
GFF1871 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 545,860 to 547,002
GFF1871
GFF1872 - no description, at 547,039 to 547,431
GFF1872
GFF1873 - KEGG: LacI family transcriptional regulator, at 547,436 to 548,446
GFF1873
Position (kb) 547
548 Strain fitness (log2 ratio) -1
0
1 at 546.218 kb on + strand, within GFF1871 at 546.218 kb on + strand, within GFF1871 at 546.505 kb on + strand, within GFF1871 at 546.506 kb on - strand, within GFF1871 at 546.620 kb on + strand, within GFF1871 at 546.620 kb on + strand, within GFF1871 at 547.040 kb on + strand at 547.041 kb on - strand at 547.115 kb on + strand, within GFF1872 at 547.115 kb on + strand, within GFF1872 at 547.115 kb on + strand, within GFF1872 at 547.116 kb on - strand, within GFF1872 at 547.116 kb on - strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.630 kb on - strand, within GFF1873 at 547.630 kb on - strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.789 kb on - strand, within GFF1873 at 547.851 kb on + strand, within GFF1873 at 547.950 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 546,218 + GFF1871 0.31 -1.7 546,218 + GFF1871 0.31 -1.2 546,505 + GFF1871 0.56 -1.3 546,506 - GFF1871 0.57 +0.1 546,620 + GFF1871 0.66 -0.9 546,620 + GFF1871 0.66 -0.5 547,040 + -0.4 547,041 - -0.3 547,115 + GFF1872 0.19 -1.3 547,115 + GFF1872 0.19 -1.0 547,115 + GFF1872 0.19 -0.7 547,116 - GFF1872 0.20 -1.1 547,116 - GFF1872 0.20 -0.5 547,283 + GFF1872 0.62 -0.7 547,283 + GFF1872 0.62 +1.4 547,283 + GFF1872 0.62 +0.0 547,283 + GFF1872 0.62 -0.1 547,283 + GFF1872 0.62 +0.2 547,283 + GFF1872 0.62 +0.4 547,311 - GFF1872 0.69 -0.1 547,311 - GFF1872 0.69 -1.1 547,311 - GFF1872 0.69 -0.5 547,311 - GFF1872 0.69 -1.3 547,630 - GFF1873 0.19 -0.6 547,630 - GFF1873 0.19 -0.6 547,788 + GFF1873 0.35 -1.6 547,788 + GFF1873 0.35 +1.2 547,789 - GFF1873 0.35 -0.8 547,851 + GFF1873 0.41 -0.2 547,950 + GFF1873 0.51 +0.7 548,175 + GFF1873 0.73 +1.3 548,175 + GFF1873 0.73 +0.9
Or see this region's nucleotide sequence