Strain Fitness in Variovorax sp. SCN45 around GFF1844

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1843 and GFF1844 are separated by 114 nucleotidesGFF1844 and GFF1845 overlap by 8 nucleotides GFF1843 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 513,287 to 514,570 GFF1843 GFF1844 - Nucleoside ABC transporter, ATP-binding protein, at 514,685 to 516,199 GFF1844 GFF1845 - Nucleoside ABC transporter, permease protein 1, at 516,192 to 517,343 GFF1845 Position (kb) 514 515 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 514.178 kb on + strand, within GFF1843at 514.179 kb on - strand, within GFF1843at 514.299 kb on - strand, within GFF1843at 514.299 kb on - strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.421 kb on - strand, within GFF1843at 514.421 kb on - strand, within GFF1843at 514.421 kb on - strand, within GFF1843at 514.425 kb on - strand, within GFF1843at 514.425 kb on - strand, within GFF1843at 514.425 kb on - strand, within GFF1843at 514.463 kb on + strandat 514.463 kb on + strandat 514.463 kb on + strandat 514.463 kb on + strandat 514.463 kb on + strandat 514.464 kb on - strandat 514.464 kb on - strandat 514.464 kb on - strandat 514.553 kb on + strandat 514.553 kb on + strandat 514.553 kb on + strandat 514.553 kb on + strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.626 kb on - strandat 514.626 kb on - strandat 514.631 kb on + strandat 514.631 kb on + strandat 514.631 kb on + strandat 514.632 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.782 kb on + strandat 514.783 kb on - strandat 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.839 kb on - strand, within GFF1844at 514.839 kb on - strand, within GFF1844at 515.057 kb on + strand, within GFF1844at 515.057 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.576 kb on + strand, within GFF1844at 515.576 kb on + strand, within GFF1844at 515.577 kb on - strand, within GFF1844at 515.577 kb on - strand, within GFF1844at 516.197 kb on + strandat 516.197 kb on + strandat 516.197 kb on + strandat 516.197 kb on + strandat 516.197 kb on + strandat 516.198 kb on - strandat 516.198 kb on - strandat 516.198 kb on - strandat 516.198 kb on - strandat 516.198 kb on - strandat 516.237 kb on + strandat 516.237 kb on + strandat 516.237 kb on + strandat 516.237 kb on + strandat 516.237 kb on + strandat 516.237 kb on + strandat 516.237 kb on + strandat 516.238 kb on - strandat 516.238 kb on - strandat 516.238 kb on - strandat 516.238 kb on - strandat 516.238 kb on - strandat 516.238 kb on - strandat 516.339 kb on + strand, within GFF1845at 516.339 kb on + strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.340 kb on - strand, within GFF1845at 516.360 kb on + strand, within GFF1845at 516.360 kb on + strand, within GFF1845at 516.361 kb on - strand, within GFF1845at 516.361 kb on - strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.651 kb on + strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.652 kb on - strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.675 kb on + strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.676 kb on - strand, within GFF1845at 516.711 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.011 kb on + strand, within GFF1845at 517.012 kb on - strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.113 kb on + strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.114 kb on - strand, within GFF1845at 517.115 kb on + strand, within GFF1845at 517.115 kb on + strand, within GFF1845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
514,178 + GFF1843 0.69 +0.5
514,179 - GFF1843 0.69 -0.5
514,299 - GFF1843 0.79 +0.4
514,299 - GFF1843 0.79 +1.8
514,420 + GFF1843 0.88 -0.8
514,420 + GFF1843 0.88 -1.1
514,420 + GFF1843 0.88 -0.5
514,420 + GFF1843 0.88 +1.8
514,420 + GFF1843 0.88 -2.2
514,420 + GFF1843 0.88 -1.1
514,421 - GFF1843 0.88 -0.2
514,421 - GFF1843 0.88 -0.0
514,421 - GFF1843 0.88 -0.7
514,425 - GFF1843 0.89 -1.2
514,425 - GFF1843 0.89 +1.8
514,425 - GFF1843 0.89 +0.7
514,463 + -0.0
514,463 + -0.5
514,463 + -0.5
514,463 + +0.4
514,463 + -0.0
514,464 - -0.7
514,464 - -1.0
514,464 - +0.5
514,553 + +1.8
514,553 + -1.0
514,553 + -0.5
514,553 + -1.2
514,554 - -0.3
514,554 - -0.2
514,554 - -0.3
514,554 - -0.4
514,554 - -0.3
514,626 - -1.1
514,626 - -0.4
514,631 + -1.0
514,631 + -0.6
514,631 + +0.1
514,632 - +0.2
514,634 - -1.1
514,634 - -0.2
514,634 - +0.3
514,634 - -1.0
514,782 + +0.6
514,783 - -1.2
514,838 + GFF1844 0.10 -0.5
514,838 + GFF1844 0.10 +0.1
514,838 + GFF1844 0.10 -0.3
514,838 + GFF1844 0.10 -0.6
514,838 + GFF1844 0.10 -0.1
514,838 + GFF1844 0.10 -0.5
514,838 + GFF1844 0.10 -1.9
514,839 - GFF1844 0.10 +0.1
514,839 - GFF1844 0.10 -0.8
515,057 + GFF1844 0.25 +0.3
515,057 + GFF1844 0.25 +0.4
515,258 + GFF1844 0.38 +0.7
515,258 + GFF1844 0.38 +0.4
515,258 + GFF1844 0.38 -0.2
515,258 + GFF1844 0.38 +0.8
515,259 - GFF1844 0.38 -0.1
515,259 - GFF1844 0.38 +0.5
515,259 - GFF1844 0.38 -0.3
515,259 - GFF1844 0.38 +0.1
515,259 - GFF1844 0.38 -0.4
515,259 - GFF1844 0.38 +0.5
515,576 + GFF1844 0.59 -0.0
515,576 + GFF1844 0.59 +1.7
515,577 - GFF1844 0.59 -0.2
515,577 - GFF1844 0.59 +0.2
516,197 + -1.3
516,197 + +0.3
516,197 + +0.6
516,197 + -1.9
516,197 + -0.5
516,198 - -0.7
516,198 - -0.2
516,198 - +0.2
516,198 - -0.5
516,198 - +0.2
516,237 + +0.3
516,237 + +2.4
516,237 + -0.0
516,237 + -1.2
516,237 + -0.7
516,237 + +0.4
516,237 + -0.9
516,238 - -0.7
516,238 - +0.8
516,238 - +0.3
516,238 - -1.2
516,238 - +0.0
516,238 - +0.7
516,339 + GFF1845 0.13 +0.5
516,339 + GFF1845 0.13 +1.4
516,340 - GFF1845 0.13 -1.0
516,340 - GFF1845 0.13 +0.4
516,340 - GFF1845 0.13 +0.2
516,340 - GFF1845 0.13 -0.3
516,340 - GFF1845 0.13 +0.2
516,340 - GFF1845 0.13 -0.1
516,340 - GFF1845 0.13 -0.1
516,340 - GFF1845 0.13 -0.5
516,340 - GFF1845 0.13 +0.2
516,360 + GFF1845 0.15 +0.2
516,360 + GFF1845 0.15 -0.3
516,361 - GFF1845 0.15 +0.1
516,361 - GFF1845 0.15 +0.0
516,651 + GFF1845 0.40 -0.1
516,651 + GFF1845 0.40 -0.5
516,651 + GFF1845 0.40 +0.0
516,651 + GFF1845 0.40 +0.6
516,652 - GFF1845 0.40 +0.8
516,652 - GFF1845 0.40 +0.3
516,652 - GFF1845 0.40 -0.2
516,652 - GFF1845 0.40 -0.1
516,675 + GFF1845 0.42 +0.3
516,675 + GFF1845 0.42 -0.3
516,675 + GFF1845 0.42 -0.3
516,675 + GFF1845 0.42 -0.5
516,675 + GFF1845 0.42 +0.3
516,675 + GFF1845 0.42 -0.9
516,675 + GFF1845 0.42 -0.0
516,676 - GFF1845 0.42 +0.3
516,676 - GFF1845 0.42 -0.0
516,676 - GFF1845 0.42 +1.1
516,676 - GFF1845 0.42 -0.0
516,676 - GFF1845 0.42 -0.8
516,711 + GFF1845 0.45 +0.3
517,011 + GFF1845 0.71 +0.3
517,011 + GFF1845 0.71 -1.6
517,011 + GFF1845 0.71 +0.3
517,011 + GFF1845 0.71 -0.9
517,012 - GFF1845 0.71 -1.3
517,113 + GFF1845 0.80 +1.3
517,113 + GFF1845 0.80 -0.2
517,113 + GFF1845 0.80 +1.6
517,113 + GFF1845 0.80 -0.0
517,113 + GFF1845 0.80 +0.1
517,113 + GFF1845 0.80 -0.5
517,113 + GFF1845 0.80 +0.2
517,114 - GFF1845 0.80 +0.6
517,114 - GFF1845 0.80 -0.1
517,114 - GFF1845 0.80 -0.3
517,114 - GFF1845 0.80 +0.1
517,114 - GFF1845 0.80 -1.0
517,114 - GFF1845 0.80 -1.3
517,114 - GFF1845 0.80 +2.6
517,114 - GFF1845 0.80 -0.2
517,114 - GFF1845 0.80 -0.0
517,114 - GFF1845 0.80 -0.4
517,115 + GFF1845 0.80 -0.2
517,115 + GFF1845 0.80 -0.0

Or see this region's nucleotide sequence