Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1826 and GFF1827 are separated by 464 nucleotides GFF1827 and GFF1828 are separated by 3 nucleotides GFF1828 and GFF1829 are separated by 112 nucleotides GFF1829 and GFF1830 overlap by 1 nucleotides
GFF1826 - hypothetical protein, at 492,095 to 492,298
GFF1826
GFF1827 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 492,763 to 493,170
GFF1827
GFF1828 - phosphodiesterase I, at 493,174 to 495,015
GFF1828
GFF1829 - 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23), at 495,128 to 495,556
GFF1829
GFF1830 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 495,556 to 496,857
GFF1830
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 492.463 kb on - strand at 492.606 kb on + strand at 492.606 kb on + strand at 492.625 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.713 kb on - strand at 492.713 kb on - strand at 492.713 kb on - strand at 492.714 kb on + strand at 492.715 kb on - strand at 492.715 kb on - strand at 493.175 kb on + strand at 493.175 kb on + strand at 493.175 kb on + strand at 493.334 kb on + strand at 493.335 kb on - strand at 493.339 kb on - strand at 493.457 kb on + strand, within GFF1828 at 493.457 kb on + strand, within GFF1828 at 493.457 kb on + strand, within GFF1828 at 493.458 kb on - strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.464 kb on - strand, within GFF1828 at 493.464 kb on - strand, within GFF1828 at 493.616 kb on + strand, within GFF1828 at 493.676 kb on + strand, within GFF1828 at 493.676 kb on + strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.688 kb on + strand, within GFF1828 at 493.688 kb on + strand, within GFF1828 at 493.892 kb on + strand, within GFF1828 at 493.982 kb on + strand, within GFF1828 at 494.040 kb on - strand, within GFF1828 at 494.057 kb on + strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.108 kb on + strand, within GFF1828 at 494.108 kb on + strand, within GFF1828 at 494.109 kb on - strand, within GFF1828 at 494.171 kb on + strand, within GFF1828 at 494.172 kb on - strand, within GFF1828 at 494.172 kb on - strand, within GFF1828 at 494.277 kb on - strand, within GFF1828 at 494.285 kb on + strand, within GFF1828 at 494.286 kb on - strand, within GFF1828 at 494.318 kb on + strand, within GFF1828 at 494.319 kb on - strand, within GFF1828 at 494.319 kb on - strand, within GFF1828 at 494.417 kb on + strand, within GFF1828 at 494.418 kb on - strand, within GFF1828 at 494.418 kb on - strand, within GFF1828 at 494.847 kb on - strand at 494.904 kb on + strand at 494.905 kb on - strand at 494.979 kb on - strand at 494.979 kb on - strand at 495.256 kb on - strand, within GFF1829 at 495.322 kb on - strand, within GFF1829 at 495.869 kb on + strand, within GFF1830
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 492,463 - -0.7 492,606 + +0.0 492,606 + +0.1 492,625 + -0.2 492,712 + -1.3 492,712 + -0.6 492,712 + +0.3 492,712 + -0.5 492,713 - -0.1 492,713 - -0.7 492,713 - -0.3 492,714 + -0.2 492,715 - +0.1 492,715 - +1.4 493,175 + +0.3 493,175 + -1.9 493,175 + -0.2 493,334 + -0.3 493,335 - -0.4 493,339 - -0.5 493,457 + GFF1828 0.15 +0.0 493,457 + GFF1828 0.15 -0.3 493,457 + GFF1828 0.15 +0.4 493,458 - GFF1828 0.15 -0.9 493,463 + GFF1828 0.16 -2.7 493,463 + GFF1828 0.16 -0.0 493,463 + GFF1828 0.16 +0.1 493,464 - GFF1828 0.16 -0.6 493,464 - GFF1828 0.16 +1.0 493,616 + GFF1828 0.24 -0.5 493,676 + GFF1828 0.27 -0.0 493,676 + GFF1828 0.27 +0.6 493,677 - GFF1828 0.27 +1.8 493,677 - GFF1828 0.27 +1.3 493,677 - GFF1828 0.27 -1.0 493,677 - GFF1828 0.27 -0.2 493,677 - GFF1828 0.27 +1.7 493,677 - GFF1828 0.27 +0.7 493,677 - GFF1828 0.27 +0.3 493,688 + GFF1828 0.28 -0.7 493,688 + GFF1828 0.28 -2.4 493,892 + GFF1828 0.39 +0.2 493,982 + GFF1828 0.44 -0.0 494,040 - GFF1828 0.47 +0.7 494,057 + GFF1828 0.48 -0.5 494,058 - GFF1828 0.48 +0.4 494,058 - GFF1828 0.48 -0.5 494,058 - GFF1828 0.48 +0.3 494,108 + GFF1828 0.51 +0.6 494,108 + GFF1828 0.51 -0.5 494,109 - GFF1828 0.51 +0.1 494,171 + GFF1828 0.54 -0.2 494,172 - GFF1828 0.54 +0.0 494,172 - GFF1828 0.54 -0.2 494,277 - GFF1828 0.60 +0.4 494,285 + GFF1828 0.60 -0.5 494,286 - GFF1828 0.60 +0.1 494,318 + GFF1828 0.62 +0.2 494,319 - GFF1828 0.62 +0.2 494,319 - GFF1828 0.62 +0.1 494,417 + GFF1828 0.67 +0.6 494,418 - GFF1828 0.68 -1.7 494,418 - GFF1828 0.68 +1.1 494,847 - -0.9 494,904 + -0.1 494,905 - -0.3 494,979 - -1.0 494,979 - -1.6 495,256 - GFF1829 0.30 +1.5 495,322 - GFF1829 0.45 -0.8 495,869 + GFF1830 0.24 -0.2
Or see this region's nucleotide sequence