Strain Fitness in Variovorax sp. SCN45 around GFF179

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF178 and GFF179 are separated by 14 nucleotidesGFF179 and GFF180 are separated by 5 nucleotidesGFF180 and GFF181 are separated by 14 nucleotides GFF178 - Mannonate dehydratase (EC 4.2.1.8), at 208,426 to 209,637 GFF178 GFF179 - D-mannonate oxidoreductase (EC 1.1.1.57), at 209,652 to 211,154 GFF179 GFF180 - no description, at 211,160 to 211,489 GFF180 GFF181 - Protein of unknown function (DUF1501), at 211,504 to 212,961 GFF181 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 208.741 kb on + strand, within GFF178at 208.741 kb on + strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.838 kb on - strand, within GFF178at 208.852 kb on + strand, within GFF178at 208.853 kb on - strand, within GFF178at 208.853 kb on - strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.927 kb on + strand, within GFF178at 208.927 kb on + strand, within GFF178at 208.928 kb on - strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.489 kb on - strand, within GFF178at 209.569 kb on + strandat 209.569 kb on + strandat 209.569 kb on + strandat 209.569 kb on + strandat 209.569 kb on + strandat 209.570 kb on - strandat 209.570 kb on - strandat 209.575 kb on + strandat 209.575 kb on + strandat 209.575 kb on + strandat 209.587 kb on + strandat 209.895 kb on + strand, within GFF179at 209.895 kb on + strand, within GFF179at 209.895 kb on + strand, within GFF179at 209.896 kb on - strand, within GFF179at 210.066 kb on + strand, within GFF179at 210.582 kb on + strand, within GFF179at 210.583 kb on - strand, within GFF179at 210.897 kb on + strand, within GFF179at 210.897 kb on + strand, within GFF179at 210.898 kb on - strand, within GFF179at 210.898 kb on - strand, within GFF179at 210.898 kb on - strand, within GFF179at 210.898 kb on - strand, within GFF179at 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.186 kb on - strandat 211.186 kb on - strandat 211.302 kb on + strand, within GFF180at 211.302 kb on + strand, within GFF180at 211.637 kb on + strandat 211.638 kb on - strandat 211.740 kb on - strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.890 kb on - strand, within GFF181at 211.890 kb on - strand, within GFF181at 211.890 kb on - strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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208,741 + GFF178 0.26 -0.6
208,741 + GFF178 0.26 -0.8
208,742 - GFF178 0.26 -0.9
208,742 - GFF178 0.26 -0.0
208,742 - GFF178 0.26 +0.9
208,784 - GFF178 0.30 -0.9
208,784 - GFF178 0.30 +0.1
208,784 - GFF178 0.30 -0.0
208,837 + GFF178 0.34 +0.0
208,837 + GFF178 0.34 -1.2
208,837 + GFF178 0.34 +0.2
208,838 - GFF178 0.34 -0.7
208,852 + GFF178 0.35 -0.1
208,853 - GFF178 0.35 -0.2
208,853 - GFF178 0.35 -1.0
208,900 + GFF178 0.39 -0.3
208,900 + GFF178 0.39 -0.9
208,900 + GFF178 0.39 +0.8
208,900 + GFF178 0.39 -1.6
208,900 + GFF178 0.39 -0.8
208,901 - GFF178 0.39 +0.0
208,901 - GFF178 0.39 -0.9
208,901 - GFF178 0.39 +0.1
208,901 - GFF178 0.39 +2.8
208,901 - GFF178 0.39 -1.6
208,927 + GFF178 0.41 -0.0
208,927 + GFF178 0.41 -1.2
208,928 - GFF178 0.41 +0.4
208,981 + GFF178 0.46 -0.3
208,981 + GFF178 0.46 -0.6
208,981 + GFF178 0.46 +0.5
208,981 + GFF178 0.46 -0.2
208,981 + GFF178 0.46 -0.6
208,982 - GFF178 0.46 -1.6
208,982 - GFF178 0.46 +0.3
208,982 - GFF178 0.46 +0.2
208,982 - GFF178 0.46 -0.8
208,982 - GFF178 0.46 +2.0
208,982 - GFF178 0.46 -0.6
209,338 + GFF178 0.75 -0.3
209,338 + GFF178 0.75 +0.6
209,338 + GFF178 0.75 +0.6
209,339 - GFF178 0.75 -0.2
209,339 - GFF178 0.75 +0.7
209,339 - GFF178 0.75 +0.1
209,339 - GFF178 0.75 +0.3
209,443 + GFF178 0.84 +0.2
209,443 + GFF178 0.84 +0.8
209,443 + GFF178 0.84 +0.2
209,443 + GFF178 0.84 +0.1
209,443 + GFF178 0.84 +0.1
209,444 - GFF178 0.84 -1.2
209,444 - GFF178 0.84 -0.3
209,444 - GFF178 0.84 -0.7
209,444 - GFF178 0.84 +1.0
209,444 - GFF178 0.84 +0.0
209,444 - GFF178 0.84 -0.5
209,444 - GFF178 0.84 -3.2
209,489 - GFF178 0.88 -0.1
209,569 + -0.2
209,569 + -0.1
209,569 + +0.6
209,569 + -0.4
209,569 + -0.9
209,570 - +0.2
209,570 - -0.3
209,575 + +0.4
209,575 + -0.9
209,575 + -0.7
209,587 + -0.1
209,895 + GFF179 0.16 +0.1
209,895 + GFF179 0.16 +1.4
209,895 + GFF179 0.16 +0.2
209,896 - GFF179 0.16 +1.8
210,066 + GFF179 0.28 -0.3
210,582 + GFF179 0.62 +0.3
210,583 - GFF179 0.62 -1.4
210,897 + GFF179 0.83 -0.9
210,897 + GFF179 0.83 +1.1
210,898 - GFF179 0.83 -0.1
210,898 - GFF179 0.83 +0.4
210,898 - GFF179 0.83 +0.3
210,898 - GFF179 0.83 -1.3
211,185 + -0.9
211,185 + +0.7
211,185 + +0.9
211,185 + -0.8
211,185 + -0.4
211,185 + +0.8
211,185 + +0.5
211,185 + -0.2
211,185 + +0.4
211,185 + -0.3
211,185 + -1.0
211,186 - -0.8
211,186 - -0.1
211,302 + GFF180 0.43 +0.6
211,302 + GFF180 0.43 -0.2
211,637 + +1.0
211,638 - +0.1
211,740 - GFF181 0.16 -0.0
211,889 + GFF181 0.26 +0.6
211,889 + GFF181 0.26 -1.0
211,889 + GFF181 0.26 +0.3
211,889 + GFF181 0.26 -0.1
211,889 + GFF181 0.26 +0.1
211,889 + GFF181 0.26 +0.9
211,889 + GFF181 0.26 +0.8
211,890 - GFF181 0.26 -0.9
211,890 - GFF181 0.26 +0.9
211,890 - GFF181 0.26 -0.5
212,066 + GFF181 0.39 -1.0
212,066 + GFF181 0.39 -0.3
212,066 + GFF181 0.39 -0.2
212,066 + GFF181 0.39 -3.5
212,066 + GFF181 0.39 -0.8
212,067 - GFF181 0.39 -0.1
212,067 - GFF181 0.39 -1.4
212,067 - GFF181 0.39 +2.0
212,067 - GFF181 0.39 -1.1
212,067 - GFF181 0.39 +0.8
212,067 - GFF181 0.39 -0.4
212,067 - GFF181 0.39 +0.3
212,067 - GFF181 0.39 +0.4
212,067 - GFF181 0.39 +0.2
212,067 - GFF181 0.39 -0.2

Or see this region's nucleotide sequence