Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1780 and GFF1781 are separated by 158 nucleotides GFF1781 and GFF1782 overlap by 4 nucleotides
GFF1780 - hypothetical protein, at 440,757 to 441,890
GFF1780
GFF1781 - Two-component transcriptional response regulator, LuxR family, at 442,049 to 442,732
GFF1781
GFF1782 - integral membrane sensor signal transduction histidine kinase, at 442,729 to 444,156
GFF1782
Position (kb) 442
443 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 441.298 kb on + strand, within GFF1780 at 441.319 kb on + strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.362 kb on - strand, within GFF1780 at 441.466 kb on + strand, within GFF1780 at 441.467 kb on - strand, within GFF1780 at 441.903 kb on + strand at 441.903 kb on + strand at 441.903 kb on + strand at 441.903 kb on + strand at 441.907 kb on + strand at 441.907 kb on + strand at 441.907 kb on + strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.998 kb on + strand at 441.998 kb on + strand at 441.998 kb on + strand at 442.263 kb on + strand, within GFF1781 at 442.263 kb on + strand, within GFF1781 at 442.340 kb on + strand, within GFF1781 at 442.340 kb on + strand, within GFF1781 at 442.341 kb on - strand, within GFF1781 at 442.406 kb on + strand, within GFF1781 at 442.406 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.664 kb on - strand at 442.664 kb on - strand at 443.233 kb on + strand, within GFF1782 at 443.242 kb on + strand, within GFF1782 at 443.243 kb on - strand, within GFF1782 at 443.246 kb on - strand, within GFF1782 at 443.246 kb on - strand, within GFF1782 at 443.384 kb on - strand, within GFF1782 at 443.384 kb on - strand, within GFF1782
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 441,298 + GFF1780 0.48 -0.8 441,319 + GFF1780 0.50 -0.2 441,320 - GFF1780 0.50 -1.2 441,320 - GFF1780 0.50 +0.3 441,320 - GFF1780 0.50 -0.4 441,362 - GFF1780 0.53 +0.5 441,466 + GFF1780 0.63 -0.9 441,467 - GFF1780 0.63 +2.8 441,903 + +0.5 441,903 + +0.5 441,903 + -0.3 441,903 + -0.5 441,907 + -0.2 441,907 + +1.6 441,907 + -0.3 441,908 - -1.3 441,908 - -0.2 441,908 - +0.3 441,908 - -0.2 441,998 + +0.0 441,998 + -0.2 441,998 + +1.5 442,263 + GFF1781 0.31 +0.5 442,263 + GFF1781 0.31 -0.1 442,340 + GFF1781 0.43 -0.8 442,340 + GFF1781 0.43 -0.9 442,341 - GFF1781 0.43 +0.8 442,406 + GFF1781 0.52 -0.5 442,406 + GFF1781 0.52 +0.0 442,627 + GFF1781 0.85 -1.2 442,627 + GFF1781 0.85 -0.5 442,627 + GFF1781 0.85 -0.3 442,627 + GFF1781 0.85 +0.3 442,628 - GFF1781 0.85 -0.6 442,628 - GFF1781 0.85 -0.7 442,628 - GFF1781 0.85 +0.8 442,661 + GFF1781 0.89 -0.1 442,661 + GFF1781 0.89 -1.7 442,661 + GFF1781 0.89 -0.1 442,661 + GFF1781 0.89 -0.7 442,661 + GFF1781 0.89 -1.9 442,662 - GFF1781 0.90 +0.0 442,662 - GFF1781 0.90 +2.6 442,662 - GFF1781 0.90 -2.1 442,662 - GFF1781 0.90 +0.3 442,664 - -1.4 442,664 - -1.9 443,233 + GFF1782 0.35 -2.1 443,242 + GFF1782 0.36 -1.5 443,243 - GFF1782 0.36 -0.8 443,246 - GFF1782 0.36 -1.4 443,246 - GFF1782 0.36 -0.5 443,384 - GFF1782 0.46 -1.0 443,384 - GFF1782 0.46 -0.2
Or see this region's nucleotide sequence