Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1773 and GFF1774 are separated by 128 nucleotides GFF1774 and GFF1775 overlap by 4 nucleotides GFF1775 and GFF1776 are separated by 28 nucleotides GFF1776 and GFF1777 are separated by 24 nucleotides
GFF1773 - D-amino acid dehydrogenase (EC 1.4.99.6), at 435,330 to 436,631
GFF1773
GFF1774 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 436,760 to 437,227
GFF1774
GFF1775 - no description, at 437,224 to 437,718
GFF1775
GFF1776 - OsmC-like protein Pfl_1628, at 437,747 to 438,148
GFF1776
GFF1777 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 438,173 to 439,354
GFF1777
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 435.817 kb on + strand, within GFF1773 at 435.818 kb on - strand, within GFF1773 at 435.862 kb on + strand, within GFF1773 at 435.862 kb on + strand, within GFF1773 at 435.863 kb on - strand, within GFF1773 at 435.883 kb on + strand, within GFF1773 at 435.883 kb on + strand, within GFF1773 at 435.884 kb on - strand, within GFF1773 at 436.141 kb on + strand, within GFF1773 at 436.141 kb on + strand, within GFF1773 at 436.141 kb on + strand, within GFF1773 at 436.142 kb on - strand, within GFF1773 at 436.164 kb on + strand, within GFF1773 at 436.243 kb on + strand, within GFF1773 at 436.243 kb on + strand, within GFF1773 at 436.243 kb on + strand, within GFF1773 at 436.244 kb on - strand, within GFF1773 at 436.244 kb on - strand, within GFF1773 at 436.291 kb on + strand, within GFF1773 at 436.292 kb on - strand, within GFF1773 at 436.292 kb on - strand, within GFF1773 at 436.330 kb on + strand, within GFF1773 at 436.330 kb on + strand, within GFF1773 at 436.331 kb on - strand, within GFF1773 at 436.480 kb on + strand, within GFF1773 at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.583 kb on - strand at 436.583 kb on - strand at 436.583 kb on - strand at 436.668 kb on + strand at 436.669 kb on - strand at 436.819 kb on + strand, within GFF1774 at 436.819 kb on + strand, within GFF1774 at 437.078 kb on + strand, within GFF1774 at 437.079 kb on - strand, within GFF1774 at 437.079 kb on - strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.390 kb on - strand, within GFF1775 at 437.621 kb on - strand, within GFF1775 at 437.621 kb on - strand, within GFF1775 at 437.695 kb on + strand at 437.695 kb on + strand at 437.696 kb on - strand at 437.696 kb on - strand at 437.879 kb on + strand, within GFF1776 at 437.880 kb on - strand, within GFF1776 at 437.924 kb on + strand, within GFF1776 at 437.924 kb on + strand, within GFF1776 at 437.925 kb on - strand, within GFF1776 at 437.925 kb on - strand, within GFF1776
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 435,817 + GFF1773 0.37 +0.8 435,818 - GFF1773 0.37 +0.7 435,862 + GFF1773 0.41 +1.1 435,862 + GFF1773 0.41 +1.7 435,863 - GFF1773 0.41 +2.1 435,883 + GFF1773 0.42 +1.3 435,883 + GFF1773 0.42 +1.6 435,884 - GFF1773 0.43 +1.0 436,141 + GFF1773 0.62 -0.5 436,141 + GFF1773 0.62 +0.8 436,141 + GFF1773 0.62 +0.5 436,142 - GFF1773 0.62 +0.3 436,164 + GFF1773 0.64 +0.9 436,243 + GFF1773 0.70 +1.0 436,243 + GFF1773 0.70 +1.0 436,243 + GFF1773 0.70 +0.7 436,244 - GFF1773 0.70 +1.8 436,244 - GFF1773 0.70 +1.0 436,291 + GFF1773 0.74 -0.2 436,292 - GFF1773 0.74 -1.0 436,292 - GFF1773 0.74 +1.5 436,330 + GFF1773 0.77 +0.8 436,330 + GFF1773 0.77 +0.7 436,331 - GFF1773 0.77 +0.8 436,480 + GFF1773 0.88 +1.6 436,579 + -0.2 436,579 + +1.0 436,579 + +0.3 436,579 + +1.1 436,579 + +1.4 436,579 + +0.5 436,579 + +1.4 436,579 + +0.9 436,579 + +2.9 436,579 + +1.3 436,580 - +1.3 436,580 - +0.4 436,580 - +1.4 436,580 - +1.3 436,580 - +1.3 436,580 - +1.2 436,580 - +0.3 436,580 - +3.7 436,580 - +0.9 436,582 + +0.5 436,582 + -0.5 436,582 + +1.1 436,582 + +0.4 436,582 + +2.1 436,583 - -0.2 436,583 - +0.5 436,583 - +0.7 436,668 + -0.4 436,669 - -0.5 436,819 + GFF1774 0.13 +1.3 436,819 + GFF1774 0.13 -0.3 437,078 + GFF1774 0.68 +0.4 437,079 - GFF1774 0.68 +0.1 437,079 - GFF1774 0.68 +0.1 437,174 + GFF1774 0.88 -0.3 437,174 + GFF1774 0.88 +0.5 437,174 + GFF1774 0.88 +0.1 437,174 + GFF1774 0.88 -0.2 437,174 + GFF1774 0.88 -0.5 437,174 + GFF1774 0.88 -1.5 437,174 + GFF1774 0.88 +0.1 437,174 + GFF1774 0.88 -1.3 437,175 - GFF1774 0.89 +0.7 437,175 - GFF1774 0.89 -0.2 437,175 - GFF1774 0.89 +0.6 437,175 - GFF1774 0.89 -1.7 437,175 - GFF1774 0.89 +0.4 437,175 - GFF1774 0.89 +0.7 437,175 - GFF1774 0.89 +0.0 437,390 - GFF1775 0.34 -0.7 437,621 - GFF1775 0.80 -0.3 437,621 - GFF1775 0.80 -0.0 437,695 + -0.9 437,695 + +0.6 437,696 - -0.9 437,696 - +0.0 437,879 + GFF1776 0.33 +0.8 437,880 - GFF1776 0.33 -1.0 437,924 + GFF1776 0.44 +0.5 437,924 + GFF1776 0.44 +0.5 437,925 - GFF1776 0.44 -2.1 437,925 - GFF1776 0.44 -0.1
Or see this region's nucleotide sequence