Strain Fitness in Variovorax sp. SCN45 around GFF1772

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1771 and GFF1772 are separated by 292 nucleotidesGFF1772 and GFF1773 are separated by 40 nucleotides GFF1771 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 432,877 to 433,914 GFF1771 GFF1772 - Putative Rieske (2Fe-2S) family oxidoreductase, large subunit, at 434,207 to 435,289 GFF1772 GFF1773 - D-amino acid dehydrogenase (EC 1.4.99.6), at 435,330 to 436,631 GFF1773 Position (kb) 434 435 436Strain fitness (log2 ratio) -2 -1 0 1 2 3at 433.274 kb on + strand, within GFF1771at 433.274 kb on + strand, within GFF1771at 433.341 kb on - strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.571 kb on + strand, within GFF1771at 433.572 kb on - strand, within GFF1771at 433.572 kb on - strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.574 kb on + strand, within GFF1771at 433.575 kb on - strand, within GFF1771at 433.575 kb on - strand, within GFF1771at 433.580 kb on + strand, within GFF1771at 433.661 kb on + strand, within GFF1771at 433.662 kb on - strand, within GFF1771at 433.713 kb on - strand, within GFF1771at 433.742 kb on + strand, within GFF1771at 433.742 kb on + strand, within GFF1771at 433.742 kb on + strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.743 kb on - strand, within GFF1771at 433.746 kb on - strand, within GFF1771at 433.746 kb on - strand, within GFF1771at 433.746 kb on - strand, within GFF1771at 434.028 kb on + strandat 434.028 kb on + strandat 434.028 kb on + strandat 434.028 kb on + strandat 434.029 kb on - strandat 434.029 kb on - strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.116 kb on + strandat 434.117 kb on - strandat 434.117 kb on - strandat 434.117 kb on - strandat 434.465 kb on + strand, within GFF1772at 434.466 kb on - strand, within GFF1772at 434.466 kb on - strand, within GFF1772at 434.491 kb on + strand, within GFF1772at 434.491 kb on + strand, within GFF1772at 434.502 kb on - strand, within GFF1772at 434.546 kb on + strand, within GFF1772at 434.546 kb on + strand, within GFF1772at 434.547 kb on - strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.570 kb on + strand, within GFF1772at 434.571 kb on - strand, within GFF1772at 434.571 kb on - strand, within GFF1772at 434.571 kb on - strand, within GFF1772at 434.660 kb on + strand, within GFF1772at 434.660 kb on + strand, within GFF1772at 434.777 kb on + strand, within GFF1772at 434.777 kb on + strand, within GFF1772at 434.777 kb on + strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.778 kb on - strand, within GFF1772at 434.903 kb on + strand, within GFF1772at 434.903 kb on + strand, within GFF1772at 434.903 kb on + strand, within GFF1772at 434.903 kb on + strand, within GFF1772at 435.240 kb on + strandat 435.241 kb on - strandat 435.241 kb on - strandat 435.241 kb on - strandat 435.241 kb on - strandat 435.241 kb on - strandat 435.241 kb on - strandat 435.241 kb on - strandat 435.520 kb on + strand, within GFF1773at 435.520 kb on + strand, within GFF1773at 435.521 kb on - strand, within GFF1773at 435.521 kb on - strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.736 kb on + strand, within GFF1773at 435.737 kb on - strand, within GFF1773at 435.737 kb on - strand, within GFF1773at 435.737 kb on - strand, within GFF1773at 435.737 kb on - strand, within GFF1773at 435.737 kb on - strand, within GFF1773at 435.817 kb on + strand, within GFF1773at 435.818 kb on - strand, within GFF1773at 435.862 kb on + strand, within GFF1773at 435.862 kb on + strand, within GFF1773at 435.863 kb on - strand, within GFF1773at 435.883 kb on + strand, within GFF1773at 435.883 kb on + strand, within GFF1773at 435.884 kb on - strand, within GFF1773at 436.141 kb on + strand, within GFF1773at 436.141 kb on + strand, within GFF1773at 436.141 kb on + strand, within GFF1773at 436.142 kb on - strand, within GFF1773at 436.164 kb on + strand, within GFF1773at 436.243 kb on + strand, within GFF1773at 436.243 kb on + strand, within GFF1773at 436.243 kb on + strand, within GFF1773at 436.244 kb on - strand, within GFF1773at 436.244 kb on - strand, within GFF1773

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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433,274 + GFF1771 0.38 -0.1
433,274 + GFF1771 0.38 +0.1
433,341 - GFF1771 0.45 -0.2
433,571 + GFF1771 0.67 +0.2
433,571 + GFF1771 0.67 +3.4
433,571 + GFF1771 0.67 -0.1
433,571 + GFF1771 0.67 -0.6
433,572 - GFF1771 0.67 -1.2
433,572 - GFF1771 0.67 +0.3
433,574 + GFF1771 0.67 +1.6
433,574 + GFF1771 0.67 -1.0
433,574 + GFF1771 0.67 -0.1
433,574 + GFF1771 0.67 -0.3
433,574 + GFF1771 0.67 +0.4
433,575 - GFF1771 0.67 -1.6
433,575 - GFF1771 0.67 -1.0
433,580 + GFF1771 0.68 -1.4
433,661 + GFF1771 0.76 -0.3
433,662 - GFF1771 0.76 +1.3
433,713 - GFF1771 0.81 -0.5
433,742 + GFF1771 0.83 -0.7
433,742 + GFF1771 0.83 +0.5
433,742 + GFF1771 0.83 -1.6
433,743 - GFF1771 0.83 -1.1
433,743 - GFF1771 0.83 +0.3
433,743 - GFF1771 0.83 -0.4
433,743 - GFF1771 0.83 -0.1
433,746 - GFF1771 0.84 +0.6
433,746 - GFF1771 0.84 -1.4
433,746 - GFF1771 0.84 +0.3
434,028 + +0.6
434,028 + -1.0
434,028 + -0.2
434,028 + -0.2
434,029 - -1.9
434,029 - -0.9
434,116 + -0.3
434,116 + -0.9
434,116 + +0.3
434,116 + +3.2
434,116 + -1.6
434,117 - +0.3
434,117 - -0.2
434,117 - +0.3
434,465 + GFF1772 0.24 +0.0
434,466 - GFF1772 0.24 +0.1
434,466 - GFF1772 0.24 +0.3
434,491 + GFF1772 0.26 +0.3
434,491 + GFF1772 0.26 +1.8
434,502 - GFF1772 0.27 -0.7
434,546 + GFF1772 0.31 +1.3
434,546 + GFF1772 0.31 +0.3
434,547 - GFF1772 0.31 +0.4
434,570 + GFF1772 0.34 -0.3
434,570 + GFF1772 0.34 +0.7
434,570 + GFF1772 0.34 +0.0
434,570 + GFF1772 0.34 +0.4
434,571 - GFF1772 0.34 +0.8
434,571 - GFF1772 0.34 +0.5
434,571 - GFF1772 0.34 +0.0
434,660 + GFF1772 0.42 +0.1
434,660 + GFF1772 0.42 +0.1
434,777 + GFF1772 0.53 -0.2
434,777 + GFF1772 0.53 +0.1
434,777 + GFF1772 0.53 -0.3
434,778 - GFF1772 0.53 +0.3
434,778 - GFF1772 0.53 -0.4
434,778 - GFF1772 0.53 -1.5
434,778 - GFF1772 0.53 +1.1
434,778 - GFF1772 0.53 -0.7
434,778 - GFF1772 0.53 -0.7
434,778 - GFF1772 0.53 -1.4
434,903 + GFF1772 0.64 +0.3
434,903 + GFF1772 0.64 +0.1
434,903 + GFF1772 0.64 -0.8
434,903 + GFF1772 0.64 -0.4
435,240 + +0.9
435,241 - +0.7
435,241 - -2.2
435,241 - -1.3
435,241 - +0.8
435,241 - -0.2
435,241 - -0.7
435,241 - -0.7
435,520 + GFF1773 0.15 +0.5
435,520 + GFF1773 0.15 +0.7
435,521 - GFF1773 0.15 +0.8
435,521 - GFF1773 0.15 +1.6
435,736 + GFF1773 0.31 +1.7
435,736 + GFF1773 0.31 +0.9
435,736 + GFF1773 0.31 +1.8
435,736 + GFF1773 0.31 +1.4
435,736 + GFF1773 0.31 +0.9
435,736 + GFF1773 0.31 +1.1
435,736 + GFF1773 0.31 +1.2
435,736 + GFF1773 0.31 +0.8
435,736 + GFF1773 0.31 +1.1
435,737 - GFF1773 0.31 +1.0
435,737 - GFF1773 0.31 +0.8
435,737 - GFF1773 0.31 +1.3
435,737 - GFF1773 0.31 +1.3
435,737 - GFF1773 0.31 +0.5
435,817 + GFF1773 0.37 +0.8
435,818 - GFF1773 0.37 +0.7
435,862 + GFF1773 0.41 +1.1
435,862 + GFF1773 0.41 +1.7
435,863 - GFF1773 0.41 +2.1
435,883 + GFF1773 0.42 +1.3
435,883 + GFF1773 0.42 +1.6
435,884 - GFF1773 0.43 +1.0
436,141 + GFF1773 0.62 -0.5
436,141 + GFF1773 0.62 +0.8
436,141 + GFF1773 0.62 +0.5
436,142 - GFF1773 0.62 +0.3
436,164 + GFF1773 0.64 +0.9
436,243 + GFF1773 0.70 +1.0
436,243 + GFF1773 0.70 +1.0
436,243 + GFF1773 0.70 +0.7
436,244 - GFF1773 0.70 +1.8
436,244 - GFF1773 0.70 +1.0

Or see this region's nucleotide sequence