Strain Fitness in Variovorax sp. SCN45 around GFF1768

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1766 and GFF1767 are separated by 7 nucleotidesGFF1767 and GFF1768 are separated by 14 nucleotidesGFF1768 and GFF1769 are separated by 211 nucleotides GFF1766 - no description, at 428,221 to 429,402 GFF1766 GFF1767 - no description, at 429,410 to 429,694 GFF1767 GFF1768 - FIG00729359: hypothetical protein, at 429,709 to 431,220 GFF1768 GFF1769 - Urease accessory protein UreD, at 431,432 to 432,262 GFF1769 Position (kb) 429 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.879 kb on + strand, within GFF1766at 428.880 kb on - strand, within GFF1766at 428.934 kb on - strand, within GFF1766at 429.146 kb on + strand, within GFF1766at 429.147 kb on - strand, within GFF1766at 429.182 kb on + strand, within GFF1766at 429.183 kb on - strand, within GFF1766at 429.411 kb on + strandat 429.411 kb on + strandat 429.411 kb on + strandat 429.411 kb on + strandat 429.411 kb on + strandat 429.412 kb on - strandat 429.519 kb on + strand, within GFF1767at 429.519 kb on + strand, within GFF1767at 429.519 kb on + strand, within GFF1767at 429.519 kb on + strand, within GFF1767at 429.520 kb on - strand, within GFF1767at 429.520 kb on - strand, within GFF1767at 429.520 kb on - strand, within GFF1767at 429.537 kb on + strand, within GFF1767at 429.537 kb on + strand, within GFF1767at 429.538 kb on - strand, within GFF1767at 429.538 kb on - strand, within GFF1767at 429.538 kb on - strand, within GFF1767at 429.598 kb on + strand, within GFF1767at 429.600 kb on + strand, within GFF1767at 429.600 kb on + strand, within GFF1767at 429.600 kb on + strand, within GFF1767at 429.601 kb on - strand, within GFF1767at 429.758 kb on + strandat 430.034 kb on - strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.187 kb on + strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.188 kb on - strand, within GFF1768at 430.490 kb on + strand, within GFF1768at 430.491 kb on - strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.640 kb on + strand, within GFF1768at 430.649 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.964 kb on + strand, within GFF1768at 430.965 kb on - strand, within GFF1768at 430.988 kb on + strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.991 kb on + strand, within GFF1768at 430.991 kb on + strand, within GFF1768at 430.991 kb on + strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 431.006 kb on + strand, within GFF1768at 431.027 kb on + strand, within GFF1768at 431.028 kb on - strand, within GFF1768at 431.028 kb on - strand, within GFF1768at 431.028 kb on - strand, within GFF1768at 431.069 kb on + strandat 431.070 kb on - strandat 431.070 kb on - strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.085 kb on - strandat 431.085 kb on - strandat 431.235 kb on + strandat 431.297 kb on + strandat 431.374 kb on + strandat 431.374 kb on + strandat 431.375 kb on - strandat 431.680 kb on - strand, within GFF1769at 431.802 kb on + strand, within GFF1769at 431.803 kb on - strand, within GFF1769at 431.803 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 432.175 kb on + strand, within GFF1769at 432.176 kb on - strand, within GFF1769

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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428,879 + GFF1766 0.56 +0.5
428,879 + GFF1766 0.56 -0.0
428,879 + GFF1766 0.56 -0.9
428,879 + GFF1766 0.56 -0.3
428,879 + GFF1766 0.56 -0.0
428,879 + GFF1766 0.56 +0.0
428,880 - GFF1766 0.56 +0.3
428,934 - GFF1766 0.60 -0.7
429,146 + GFF1766 0.78 +1.1
429,147 - GFF1766 0.78 -0.1
429,182 + GFF1766 0.81 -0.9
429,183 - GFF1766 0.81 -0.1
429,411 + -1.1
429,411 + -0.1
429,411 + +0.0
429,411 + -0.1
429,411 + -0.5
429,412 - -0.3
429,519 + GFF1767 0.38 +0.1
429,519 + GFF1767 0.38 +0.3
429,519 + GFF1767 0.38 -0.6
429,519 + GFF1767 0.38 -1.0
429,520 - GFF1767 0.39 -1.0
429,520 - GFF1767 0.39 +0.8
429,520 - GFF1767 0.39 -0.5
429,537 + GFF1767 0.45 -0.3
429,537 + GFF1767 0.45 -0.3
429,538 - GFF1767 0.45 +0.6
429,538 - GFF1767 0.45 -0.5
429,538 - GFF1767 0.45 +0.8
429,598 + GFF1767 0.66 +1.2
429,600 + GFF1767 0.67 -0.3
429,600 + GFF1767 0.67 +0.0
429,600 + GFF1767 0.67 -0.1
429,601 - GFF1767 0.67 -0.4
429,758 + -0.9
430,034 - GFF1768 0.21 -0.2
430,187 + GFF1768 0.32 -0.2
430,187 + GFF1768 0.32 -1.1
430,187 + GFF1768 0.32 -0.7
430,187 + GFF1768 0.32 -0.0
430,187 + GFF1768 0.32 +0.1
430,187 + GFF1768 0.32 -1.0
430,187 + GFF1768 0.32 -0.6
430,187 + GFF1768 0.32 -1.2
430,187 + GFF1768 0.32 +0.3
430,187 + GFF1768 0.32 -0.9
430,187 + GFF1768 0.32 -2.1
430,187 + GFF1768 0.32 -0.4
430,187 + GFF1768 0.32 -0.1
430,187 + GFF1768 0.32 -1.0
430,187 + GFF1768 0.32 -0.2
430,187 + GFF1768 0.32 -0.5
430,187 + GFF1768 0.32 -1.4
430,188 - GFF1768 0.32 +0.0
430,188 - GFF1768 0.32 -0.4
430,188 - GFF1768 0.32 +0.1
430,188 - GFF1768 0.32 -0.8
430,188 - GFF1768 0.32 -0.2
430,188 - GFF1768 0.32 -0.8
430,490 + GFF1768 0.52 -1.3
430,491 - GFF1768 0.52 +0.0
430,622 + GFF1768 0.60 -1.0
430,622 + GFF1768 0.60 -0.3
430,622 + GFF1768 0.60 +0.3
430,622 + GFF1768 0.60 -2.1
430,622 + GFF1768 0.60 -0.5
430,622 + GFF1768 0.60 -0.4
430,622 + GFF1768 0.60 -1.3
430,622 + GFF1768 0.60 +1.0
430,623 - GFF1768 0.60 +0.3
430,623 - GFF1768 0.60 -2.3
430,623 - GFF1768 0.60 +1.8
430,623 - GFF1768 0.60 +0.9
430,623 - GFF1768 0.60 +1.0
430,640 + GFF1768 0.62 -0.6
430,649 + GFF1768 0.62 -0.4
430,739 + GFF1768 0.68 +0.3
430,739 + GFF1768 0.68 -0.9
430,739 + GFF1768 0.68 +0.3
430,739 + GFF1768 0.68 -0.0
430,739 + GFF1768 0.68 -0.7
430,740 - GFF1768 0.68 -0.1
430,740 - GFF1768 0.68 -1.6
430,740 - GFF1768 0.68 +1.0
430,740 - GFF1768 0.68 +1.3
430,740 - GFF1768 0.68 +0.5
430,740 - GFF1768 0.68 -0.8
430,964 + GFF1768 0.83 +0.0
430,965 - GFF1768 0.83 +0.0
430,988 + GFF1768 0.85 +0.6
430,989 - GFF1768 0.85 -1.0
430,989 - GFF1768 0.85 -1.7
430,989 - GFF1768 0.85 -1.5
430,989 - GFF1768 0.85 +0.4
430,991 + GFF1768 0.85 +1.6
430,991 + GFF1768 0.85 -0.2
430,991 + GFF1768 0.85 -0.8
430,992 - GFF1768 0.85 -0.4
430,992 - GFF1768 0.85 -0.4
430,992 - GFF1768 0.85 -1.4
430,992 - GFF1768 0.85 -0.7
431,006 + GFF1768 0.86 -0.4
431,027 + GFF1768 0.87 -0.3
431,028 - GFF1768 0.87 -0.3
431,028 - GFF1768 0.87 -0.5
431,028 - GFF1768 0.87 -0.4
431,069 + -0.7
431,070 - +0.5
431,070 - -0.2
431,084 + +0.9
431,084 + -0.7
431,084 + +0.2
431,084 + -0.2
431,084 + -0.8
431,084 + +0.7
431,085 - +0.3
431,085 - -0.2
431,235 + -0.6
431,297 + +2.1
431,374 + +0.2
431,374 + -0.0
431,375 - -1.7
431,680 - GFF1769 0.30 +0.5
431,802 + GFF1769 0.45 -0.2
431,803 - GFF1769 0.45 -0.7
431,803 - GFF1769 0.45 -0.6
431,926 - GFF1769 0.59 -0.7
431,926 - GFF1769 0.59 +0.2
431,926 - GFF1769 0.59 +0.0
431,926 - GFF1769 0.59 -0.5
432,175 + GFF1769 0.89 +0.1
432,176 - GFF1769 0.90 +0.4

Or see this region's nucleotide sequence