Strain Fitness in Variovorax sp. SCN45 around GFF1725

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
372,495	+		GFF1722	0.61	-1.0
372,495	+		GFF1722	0.61	-0.4
372,496	-		GFF1722	0.62	-0.2
372,809	+				-0.5
372,810	-				-0.4
372,810	-				-0.3
373,406	+				-0.6
373,406	+				+0.1
373,406	+				+2.1
373,407	-				+0.3
373,407	-				-0.9
373,407	-				+2.0
373,407	-				-0.4
373,407	-				+0.3
373,638	+		GFF1725	0.24	-1.4
373,638	+		GFF1725	0.24	-0.6
373,994	+		GFF1725	0.59	+1.3
373,994	+		GFF1725	0.59	-0.0
373,994	+		GFF1725	0.59	-1.1
373,995	-		GFF1725	0.59	-1.5
374,119	-		GFF1725	0.71	-1.5
374,127	+		GFF1725	0.72	+1.1
374,127	+		GFF1725	0.72	+0.5
374,127	+		GFF1725	0.72	-0.4
374,128	-		GFF1725	0.72	-0.3
374,361	+				-0.4
374,484	+				+0.2
374,485	-				-0.6
374,485	-				-0.4
374,541	-				-0.5
374,759	+				+0.2
374,760	-				+0.0
374,825	-				-0.2
375,008	+				-0.1
375,348	+				+0.3
375,348	+				+0.1
375,348	+				+0.3
375,348	+				-0.3
375,349	-				-0.8
375,349	-				+1.0
375,349	-				+1.3
375,372	+				-0.2
375,372	+				-0.1
375,372	+				-0.2
375,372	+				-1.6
375,372	+				-0.5
375,372	+				-0.2
375,372	+				-0.1
375,372	+				+0.3
375,372	+				-0.4
375,373	-				-1.0
375,373	-				-0.3
375,373	-				-1.2
375,373	-				+0.3
375,373	-				+0.7
375,373	-				-0.6
375,373	-				-0.2
375,373	-				+0.1
375,373	-				-1.0
375,373	-				-1.8
375,373	-				-0.6
375,373	-				+0.8
375,373	-				+1.8
375,373	-				-0.0
375,373	-				+1.4
375,373	-				-1.0
375,373	-				-0.6