Strain Fitness in Variovorax sp. SCN45 around GFF167

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF166 and GFF167 are separated by 164 nucleotidesGFF167 and GFF168 overlap by 4 nucleotidesGFF168 and GFF169 overlap by 4 nucleotides GFF166 - Permease of the drug/metabolite transporter (DMT) superfamily, at 194,477 to 195,532 GFF166 GFF167 - Two-component system sensor histidine kinase, at 195,697 to 199,197 GFF167 GFF168 - MCP methyltransferase, CheR-type, at 199,194 to 200,060 GFF168 GFF169 - Protein-glutamate methylesterase (EC 3.1.1.61), at 200,057 to 200,659 GFF169 Position (kb) 195 196 197 198 199 200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 194.717 kb on + strand, within GFF166at 194.717 kb on + strand, within GFF166at 194.726 kb on - strand, within GFF166at 194.726 kb on - strand, within GFF166at 194.726 kb on - strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.832 kb on + strand, within GFF166at 194.833 kb on - strand, within GFF166at 194.833 kb on - strand, within GFF166at 194.833 kb on - strand, within GFF166at 194.833 kb on - strand, within GFF166at 195.168 kb on + strand, within GFF166at 195.169 kb on - strand, within GFF166at 195.169 kb on - strand, within GFF166at 195.955 kb on + strandat 196.133 kb on + strand, within GFF167at 196.133 kb on + strand, within GFF167at 196.133 kb on + strand, within GFF167at 196.306 kb on + strand, within GFF167at 196.306 kb on + strand, within GFF167at 196.307 kb on - strand, within GFF167at 196.345 kb on + strand, within GFF167at 196.345 kb on + strand, within GFF167at 196.345 kb on + strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.346 kb on - strand, within GFF167at 196.378 kb on - strand, within GFF167at 196.389 kb on - strand, within GFF167at 196.389 kb on - strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.525 kb on + strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.526 kb on - strand, within GFF167at 196.567 kb on + strand, within GFF167at 196.567 kb on + strand, within GFF167at 196.567 kb on + strand, within GFF167at 196.567 kb on + strand, within GFF167at 196.567 kb on + strand, within GFF167at 196.684 kb on + strand, within GFF167at 196.684 kb on + strand, within GFF167at 196.684 kb on + strand, within GFF167at 196.684 kb on + strand, within GFF167at 197.153 kb on - strand, within GFF167at 197.153 kb on - strand, within GFF167at 197.153 kb on - strand, within GFF167at 197.290 kb on + strand, within GFF167at 197.290 kb on + strand, within GFF167at 197.291 kb on - strand, within GFF167at 197.878 kb on + strand, within GFF167at 197.878 kb on + strand, within GFF167at 197.878 kb on + strand, within GFF167at 197.878 kb on + strand, within GFF167at 197.878 kb on + strand, within GFF167at 197.878 kb on + strand, within GFF167at 197.878 kb on + strand, within GFF167at 197.879 kb on - strand, within GFF167at 197.879 kb on - strand, within GFF167at 197.879 kb on - strand, within GFF167at 197.879 kb on - strand, within GFF167at 197.879 kb on - strand, within GFF167at 197.879 kb on - strand, within GFF167at 197.879 kb on - strand, within GFF167at 197.881 kb on - strand, within GFF167at 198.061 kb on + strand, within GFF167at 198.061 kb on + strand, within GFF167at 198.062 kb on - strand, within GFF167at 198.304 kb on + strand, within GFF167at 198.304 kb on + strand, within GFF167at 198.619 kb on + strand, within GFF167at 198.619 kb on + strand, within GFF167at 198.902 kb on - strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.290 kb on + strand, within GFF168at 199.290 kb on + strand, within GFF168at 199.291 kb on - strand, within GFF168at 199.291 kb on - strand, within GFF168at 199.291 kb on - strand, within GFF168at 199.299 kb on + strand, within GFF168at 199.299 kb on + strand, within GFF168at 199.300 kb on - strand, within GFF168at 199.305 kb on + strand, within GFF168at 199.305 kb on + strand, within GFF168at 199.305 kb on + strand, within GFF168at 199.305 kb on + strand, within GFF168at 199.306 kb on - strand, within GFF168at 199.306 kb on - strand, within GFF168at 199.306 kb on - strand, within GFF168at 199.307 kb on - strand, within GFF168at 199.320 kb on + strand, within GFF168at 199.321 kb on - strand, within GFF168at 199.486 kb on - strand, within GFF168at 199.531 kb on - strand, within GFF168at 199.531 kb on - strand, within GFF168at 199.635 kb on + strand, within GFF168at 199.635 kb on + strand, within GFF168at 199.710 kb on + strand, within GFF168at 199.710 kb on + strand, within GFF168at 199.710 kb on + strand, within GFF168at 199.722 kb on + strand, within GFF168at 199.723 kb on - strand, within GFF168at 199.758 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.761 kb on + strand, within GFF168at 199.762 kb on - strand, within GFF168at 199.762 kb on - strand, within GFF168at 199.773 kb on + strand, within GFF168at 199.774 kb on - strand, within GFF168at 199.893 kb on + strand, within GFF168at 199.894 kb on - strand, within GFF168at 200.043 kb on + strandat 200.044 kb on - strandat 200.175 kb on + strand, within GFF169at 200.175 kb on + strand, within GFF169at 200.175 kb on + strand, within GFF169at 200.175 kb on + strand, within GFF169at 200.175 kb on + strand, within GFF169at 200.175 kb on + strand, within GFF169at 200.176 kb on - strand, within GFF169at 200.176 kb on - strand, within GFF169at 200.176 kb on - strand, within GFF169

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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194,717 + GFF166 0.23 -0.4
194,717 + GFF166 0.23 -0.7
194,726 - GFF166 0.24 +0.6
194,726 - GFF166 0.24 -0.1
194,726 - GFF166 0.24 +0.2
194,832 + GFF166 0.34 -0.7
194,832 + GFF166 0.34 -0.7
194,832 + GFF166 0.34 -0.9
194,832 + GFF166 0.34 -0.5
194,833 - GFF166 0.34 +0.4
194,833 - GFF166 0.34 +0.0
194,833 - GFF166 0.34 +0.6
194,833 - GFF166 0.34 -1.2
195,168 + GFF166 0.65 -0.8
195,169 - GFF166 0.66 -0.4
195,169 - GFF166 0.66 -0.3
195,955 + -0.0
196,133 + GFF167 0.12 -1.0
196,133 + GFF167 0.12 +0.8
196,133 + GFF167 0.12 -0.6
196,306 + GFF167 0.17 +1.9
196,306 + GFF167 0.17 -2.8
196,307 - GFF167 0.17 +0.5
196,345 + GFF167 0.19 +0.3
196,345 + GFF167 0.19 -1.7
196,345 + GFF167 0.19 -0.6
196,346 - GFF167 0.19 +1.4
196,346 - GFF167 0.19 -1.4
196,346 - GFF167 0.19 +0.0
196,346 - GFF167 0.19 -0.2
196,346 - GFF167 0.19 +0.4
196,378 - GFF167 0.19 -1.7
196,389 - GFF167 0.20 -0.3
196,389 - GFF167 0.20 +1.2
196,525 + GFF167 0.24 -0.2
196,525 + GFF167 0.24 -0.5
196,525 + GFF167 0.24 +0.0
196,525 + GFF167 0.24 -0.3
196,525 + GFF167 0.24 +0.7
196,525 + GFF167 0.24 +1.4
196,525 + GFF167 0.24 +0.4
196,525 + GFF167 0.24 +0.8
196,525 + GFF167 0.24 -0.3
196,525 + GFF167 0.24 -0.7
196,525 + GFF167 0.24 -0.5
196,525 + GFF167 0.24 +0.4
196,525 + GFF167 0.24 -0.1
196,525 + GFF167 0.24 -0.3
196,525 + GFF167 0.24 -1.0
196,525 + GFF167 0.24 +0.4
196,525 + GFF167 0.24 -0.4
196,525 + GFF167 0.24 -0.6
196,525 + GFF167 0.24 -0.2
196,525 + GFF167 0.24 +0.3
196,525 + GFF167 0.24 -0.4
196,526 - GFF167 0.24 -0.3
196,526 - GFF167 0.24 -0.3
196,526 - GFF167 0.24 -2.3
196,526 - GFF167 0.24 +0.7
196,526 - GFF167 0.24 +1.4
196,526 - GFF167 0.24 +0.3
196,526 - GFF167 0.24 -0.4
196,526 - GFF167 0.24 +1.4
196,526 - GFF167 0.24 +0.3
196,526 - GFF167 0.24 +1.3
196,526 - GFF167 0.24 +0.4
196,526 - GFF167 0.24 -1.4
196,526 - GFF167 0.24 -0.0
196,526 - GFF167 0.24 +0.2
196,526 - GFF167 0.24 -1.0
196,526 - GFF167 0.24 +0.3
196,526 - GFF167 0.24 +0.7
196,526 - GFF167 0.24 -1.1
196,526 - GFF167 0.24 -0.2
196,526 - GFF167 0.24 -0.3
196,526 - GFF167 0.24 +0.1
196,526 - GFF167 0.24 +0.3
196,526 - GFF167 0.24 -0.2
196,526 - GFF167 0.24 +0.8
196,567 + GFF167 0.25 +0.8
196,567 + GFF167 0.25 -1.3
196,567 + GFF167 0.25 +0.4
196,567 + GFF167 0.25 -0.1
196,567 + GFF167 0.25 +0.2
196,684 + GFF167 0.28 -0.2
196,684 + GFF167 0.28 -0.3
196,684 + GFF167 0.28 +0.3
196,684 + GFF167 0.28 -0.7
197,153 - GFF167 0.42 +0.2
197,153 - GFF167 0.42 +0.8
197,153 - GFF167 0.42 -0.9
197,290 + GFF167 0.46 +0.0
197,290 + GFF167 0.46 +0.1
197,291 - GFF167 0.46 +0.2
197,878 + GFF167 0.62 -0.1
197,878 + GFF167 0.62 -0.1
197,878 + GFF167 0.62 +0.2
197,878 + GFF167 0.62 +1.0
197,878 + GFF167 0.62 +0.2
197,878 + GFF167 0.62 -0.2
197,878 + GFF167 0.62 +0.1
197,879 - GFF167 0.62 +0.6
197,879 - GFF167 0.62 -0.4
197,879 - GFF167 0.62 -0.6
197,879 - GFF167 0.62 -1.4
197,879 - GFF167 0.62 -2.2
197,879 - GFF167 0.62 -0.2
197,879 - GFF167 0.62 -1.1
197,881 - GFF167 0.62 +0.1
198,061 + GFF167 0.68 +0.8
198,061 + GFF167 0.68 -0.0
198,062 - GFF167 0.68 +0.8
198,304 + GFF167 0.74 -0.4
198,304 + GFF167 0.74 +0.4
198,619 + GFF167 0.83 +0.4
198,619 + GFF167 0.83 -0.1
198,902 - -0.8
199,120 + +0.2
199,120 + -1.0
199,120 + -1.6
199,120 + -0.4
199,120 + +1.4
199,120 + -0.3
199,120 + -1.3
199,121 - -0.2
199,121 - -1.4
199,121 - +0.3
199,290 + GFF168 0.11 -1.6
199,290 + GFF168 0.11 -1.5
199,291 - GFF168 0.11 +0.4
199,291 - GFF168 0.11 -1.7
199,291 - GFF168 0.11 -2.0
199,299 + GFF168 0.12 +0.2
199,299 + GFF168 0.12 +2.7
199,300 - GFF168 0.12 -4.0
199,305 + GFF168 0.13 -1.2
199,305 + GFF168 0.13 -1.0
199,305 + GFF168 0.13 -0.6
199,305 + GFF168 0.13 -0.6
199,306 - GFF168 0.13 -0.9
199,306 - GFF168 0.13 -1.6
199,306 - GFF168 0.13 -2.0
199,307 - GFF168 0.13 -2.7
199,320 + GFF168 0.15 +0.6
199,321 - GFF168 0.15 -2.5
199,486 - GFF168 0.34 -2.2
199,531 - GFF168 0.39 -1.6
199,531 - GFF168 0.39 -2.2
199,635 + GFF168 0.51 -1.2
199,635 + GFF168 0.51 +0.4
199,710 + GFF168 0.60 +0.9
199,710 + GFF168 0.60 +0.9
199,710 + GFF168 0.60 -3.1
199,722 + GFF168 0.61 -1.0
199,723 - GFF168 0.61 -3.7
199,758 + GFF168 0.65 -2.4
199,761 + GFF168 0.65 -0.6
199,761 + GFF168 0.65 -2.2
199,761 + GFF168 0.65 -0.2
199,761 + GFF168 0.65 +0.4
199,761 + GFF168 0.65 -1.6
199,761 + GFF168 0.65 -3.2
199,761 + GFF168 0.65 +0.6
199,761 + GFF168 0.65 -0.2
199,762 - GFF168 0.66 -1.9
199,762 - GFF168 0.66 -1.4
199,773 + GFF168 0.67 -2.2
199,774 - GFF168 0.67 -1.6
199,893 + GFF168 0.81 +0.0
199,894 - GFF168 0.81 +0.4
200,043 + -0.7
200,044 - -1.6
200,175 + GFF169 0.20 -0.5
200,175 + GFF169 0.20 +0.2
200,175 + GFF169 0.20 -0.2
200,175 + GFF169 0.20 -0.9
200,175 + GFF169 0.20 -0.2
200,175 + GFF169 0.20 -0.9
200,176 - GFF169 0.20 -0.6
200,176 - GFF169 0.20 +0.0
200,176 - GFF169 0.20 -1.4

Or see this region's nucleotide sequence