Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1660 and GFF1661 are separated by 17 nucleotides GFF1661 and GFF1662 are separated by 316 nucleotides
GFF1660 - Type IV fimbrial biogenesis protein PilY1, at 302,273 to 304,027
GFF1660
GFF1661 - no description, at 304,045 to 304,251
GFF1661
GFF1662 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 304,568 to 306,055
GFF1662
Position (kb) 304
305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 303.945 kb on + strand at 303.945 kb on + strand at 303.945 kb on + strand at 303.945 kb on + strand at 303.946 kb on - strand at 303.946 kb on - strand at 303.946 kb on - strand at 303.946 kb on - strand at 303.946 kb on - strand at 303.946 kb on - strand at 303.946 kb on - strand at 303.946 kb on - strand at 304.008 kb on + strand at 304.008 kb on + strand at 304.008 kb on + strand at 304.008 kb on + strand at 304.008 kb on + strand at 304.008 kb on + strand at 304.008 kb on + strand at 304.009 kb on - strand at 304.009 kb on - strand at 304.009 kb on - strand at 304.009 kb on - strand at 304.009 kb on - strand at 304.009 kb on - strand at 304.009 kb on - strand at 304.047 kb on - strand at 304.047 kb on - strand at 304.080 kb on + strand, within GFF1661 at 304.080 kb on + strand, within GFF1661 at 304.081 kb on - strand, within GFF1661 at 304.219 kb on + strand, within GFF1661 at 304.283 kb on + strand at 304.283 kb on + strand at 304.283 kb on + strand at 304.283 kb on + strand at 304.284 kb on - strand at 304.289 kb on - strand at 304.332 kb on - strand at 304.332 kb on - strand at 304.342 kb on - strand at 304.342 kb on - strand at 304.342 kb on - strand at 304.484 kb on + strand at 304.484 kb on + strand at 304.485 kb on - strand at 304.485 kb on - strand at 304.485 kb on - strand at 304.488 kb on + strand at 304.488 kb on + strand at 304.489 kb on - strand at 304.659 kb on + strand at 304.890 kb on + strand, within GFF1662 at 304.890 kb on + strand, within GFF1662 at 304.890 kb on + strand, within GFF1662 at 304.890 kb on + strand, within GFF1662 at 304.890 kb on + strand, within GFF1662 at 304.890 kb on + strand, within GFF1662 at 304.891 kb on - strand, within GFF1662 at 304.891 kb on - strand, within GFF1662 at 304.891 kb on - strand, within GFF1662 at 304.891 kb on - strand, within GFF1662 at 305.088 kb on + strand, within GFF1662 at 305.089 kb on - strand, within GFF1662 at 305.089 kb on - strand, within GFF1662 at 305.089 kb on - strand, within GFF1662 at 305.089 kb on - strand, within GFF1662 at 305.089 kb on - strand, within GFF1662 at 305.089 kb on - strand, within GFF1662 at 305.163 kb on + strand, within GFF1662 at 305.163 kb on + strand, within GFF1662 at 305.163 kb on + strand, within GFF1662 at 305.163 kb on + strand, within GFF1662 at 305.163 kb on + strand, within GFF1662 at 305.164 kb on - strand, within GFF1662 at 305.164 kb on - strand, within GFF1662 at 305.164 kb on - strand, within GFF1662 at 305.164 kb on - strand, within GFF1662 at 305.164 kb on - strand, within GFF1662 at 305.164 kb on - strand, within GFF1662 at 305.254 kb on - strand, within GFF1662 at 305.274 kb on + strand, within GFF1662 at 305.274 kb on + strand, within GFF1662 at 305.274 kb on + strand, within GFF1662 at 305.274 kb on + strand, within GFF1662 at 305.274 kb on + strand, within GFF1662 at 305.274 kb on + strand, within GFF1662 at 305.274 kb on + strand, within GFF1662 at 305.275 kb on - strand, within GFF1662 at 305.275 kb on - strand, within GFF1662 at 305.275 kb on - strand, within GFF1662 at 305.275 kb on - strand, within GFF1662 at 305.275 kb on - strand, within GFF1662 at 305.275 kb on - strand, within GFF1662 at 305.275 kb on - strand, within GFF1662 at 305.345 kb on - strand, within GFF1662 at 305.394 kb on + strand, within GFF1662 at 305.419 kb on + strand, within GFF1662 at 305.420 kb on - strand, within GFF1662 at 305.529 kb on + strand, within GFF1662 at 305.529 kb on + strand, within GFF1662 at 305.529 kb on + strand, within GFF1662 at 305.529 kb on + strand, within GFF1662 at 305.530 kb on - strand, within GFF1662 at 305.530 kb on - strand, within GFF1662 at 305.530 kb on - strand, within GFF1662 at 305.577 kb on + strand, within GFF1662 at 305.578 kb on - strand, within GFF1662 at 305.578 kb on - strand, within GFF1662 at 305.840 kb on + strand, within GFF1662 at 305.862 kb on + strand, within GFF1662 at 305.863 kb on - strand, within GFF1662 at 305.863 kb on - strand, within GFF1662 at 305.863 kb on - strand, within GFF1662 at 305.868 kb on + strand, within GFF1662 at 305.869 kb on - strand, within GFF1662 at 305.979 kb on + strand at 305.979 kb on + strand at 305.979 kb on + strand at 305.980 kb on - strand at 305.980 kb on - strand at 305.980 kb on - strand at 305.980 kb on - strand at 305.980 kb on - strand at 306.048 kb on + strand at 306.048 kb on + strand at 306.048 kb on + strand at 306.049 kb on - strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.088 kb on + strand at 306.089 kb on - strand at 306.089 kb on - strand at 306.089 kb on - strand at 306.089 kb on - strand at 306.089 kb on - strand at 306.089 kb on - strand at 306.091 kb on - strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.274 kb on + strand at 306.274 kb on + strand at 306.275 kb on - strand at 306.275 kb on - strand at 306.488 kb on - strand at 306.539 kb on + strand at 306.694 kb on + strand at 306.694 kb on + strand at 306.694 kb on + strand at 306.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 303,945 + +0.2 303,945 + +0.7 303,945 + +0.1 303,945 + -0.6 303,946 - -0.6 303,946 - -0.0 303,946 - -1.6 303,946 - +1.4 303,946 - -0.8 303,946 - +0.3 303,946 - -0.2 303,946 - -0.0 304,008 + -0.2 304,008 + +0.6 304,008 + -0.2 304,008 + +0.8 304,008 + +0.1 304,008 + -0.5 304,008 + -0.1 304,009 - -0.4 304,009 - -0.2 304,009 - -2.0 304,009 - -0.8 304,009 - -0.5 304,009 - -0.7 304,009 - -1.0 304,047 - +0.5 304,047 - -1.7 304,080 + GFF1661 0.17 +0.4 304,080 + GFF1661 0.17 +1.1 304,081 - GFF1661 0.17 +0.9 304,219 + GFF1661 0.84 -0.6 304,283 + -0.1 304,283 + -1.1 304,283 + -0.4 304,283 + -0.9 304,284 - +0.3 304,289 - -0.1 304,332 - -1.3 304,332 - +0.7 304,342 - -1.6 304,342 - -0.2 304,342 - +0.1 304,484 + +0.9 304,484 + +0.0 304,485 - -0.3 304,485 - +0.5 304,485 - -0.1 304,488 + +0.4 304,488 + +0.9 304,489 - +0.1 304,659 + +0.7 304,890 + GFF1662 0.22 +0.1 304,890 + GFF1662 0.22 +0.5 304,890 + GFF1662 0.22 -0.0 304,890 + GFF1662 0.22 +0.1 304,890 + GFF1662 0.22 -0.5 304,890 + GFF1662 0.22 +1.4 304,891 - GFF1662 0.22 +1.0 304,891 - GFF1662 0.22 -0.5 304,891 - GFF1662 0.22 -0.3 304,891 - GFF1662 0.22 +0.5 305,088 + GFF1662 0.35 -0.9 305,089 - GFF1662 0.35 -0.3 305,089 - GFF1662 0.35 -0.7 305,089 - GFF1662 0.35 -0.9 305,089 - GFF1662 0.35 -0.4 305,089 - GFF1662 0.35 -1.7 305,089 - GFF1662 0.35 +0.0 305,163 + GFF1662 0.40 +0.7 305,163 + GFF1662 0.40 -0.2 305,163 + GFF1662 0.40 +1.1 305,163 + GFF1662 0.40 -0.4 305,163 + GFF1662 0.40 -0.5 305,164 - GFF1662 0.40 -0.4 305,164 - GFF1662 0.40 +0.5 305,164 - GFF1662 0.40 -0.7 305,164 - GFF1662 0.40 -1.4 305,164 - GFF1662 0.40 -0.9 305,164 - GFF1662 0.40 -0.6 305,254 - GFF1662 0.46 -2.4 305,274 + GFF1662 0.47 +1.3 305,274 + GFF1662 0.47 -0.4 305,274 + GFF1662 0.47 -1.6 305,274 + GFF1662 0.47 +0.4 305,274 + GFF1662 0.47 +0.1 305,274 + GFF1662 0.47 -0.5 305,274 + GFF1662 0.47 +1.2 305,275 - GFF1662 0.48 -0.6 305,275 - GFF1662 0.48 +0.8 305,275 - GFF1662 0.48 +1.0 305,275 - GFF1662 0.48 -0.3 305,275 - GFF1662 0.48 +0.9 305,275 - GFF1662 0.48 +0.2 305,275 - GFF1662 0.48 -0.6 305,345 - GFF1662 0.52 -0.1 305,394 + GFF1662 0.56 -0.6 305,419 + GFF1662 0.57 +0.5 305,420 - GFF1662 0.57 +0.3 305,529 + GFF1662 0.65 -0.5 305,529 + GFF1662 0.65 +0.3 305,529 + GFF1662 0.65 -1.3 305,529 + GFF1662 0.65 -0.1 305,530 - GFF1662 0.65 +0.1 305,530 - GFF1662 0.65 -0.5 305,530 - GFF1662 0.65 -0.6 305,577 + GFF1662 0.68 +0.9 305,578 - GFF1662 0.68 -0.8 305,578 - GFF1662 0.68 -0.3 305,840 + GFF1662 0.85 -0.4 305,862 + GFF1662 0.87 +1.4 305,863 - GFF1662 0.87 -0.4 305,863 - GFF1662 0.87 +0.3 305,863 - GFF1662 0.87 -0.3 305,868 + GFF1662 0.87 -0.1 305,869 - GFF1662 0.87 -0.1 305,979 + -0.5 305,979 + -0.4 305,979 + +0.1 305,980 - +0.3 305,980 - -2.8 305,980 - -0.9 305,980 - +0.1 305,980 - +0.9 306,048 + +0.8 306,048 + -0.1 306,048 + -0.9 306,049 - -0.9 306,088 + -0.8 306,088 + +0.4 306,088 + +0.5 306,088 + +0.1 306,088 + -0.7 306,088 + +0.9 306,088 + +0.4 306,088 + -0.1 306,088 + -1.0 306,089 - -0.5 306,089 - -1.0 306,089 - +0.0 306,089 - -1.1 306,089 - -0.2 306,089 - +0.9 306,091 - +0.2 306,111 + +0.5 306,111 + -0.0 306,111 + -2.6 306,111 + -0.6 306,111 + -0.1 306,111 + -0.3 306,111 + +0.3 306,111 + -2.2 306,112 - -0.7 306,112 - -0.6 306,112 - -0.1 306,112 - -0.3 306,112 - -0.9 306,274 + -0.5 306,274 + +0.1 306,275 - -0.3 306,275 - -1.4 306,488 - -0.2 306,539 + -0.2 306,694 + +0.1 306,694 + +0.2 306,694 + -1.8 306,844 + -0.5
Or see this region's nucleotide sequence