Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1657 and GFF1658 are separated by 91 nucleotides GFF1658 and GFF1659 overlap by 4 nucleotides GFF1659 and GFF1660 are separated by 23 nucleotides
GFF1657 - Nitronate monooxygenase (EC 1.13.12.16), at 298,998 to 300,119
GFF1657
GFF1658 - Transcriptional regulator, LysR family, at 300,211 to 301,086
GFF1658
GFF1659 - Uncharacterized MFS-type transporter, at 301,083 to 302,249
GFF1659
GFF1660 - Type IV fimbrial biogenesis protein PilY1, at 302,273 to 304,027
GFF1660
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.138 kb on + strand at 300.139 kb on - strand at 300.183 kb on + strand at 300.409 kb on + strand, within GFF1658 at 300.553 kb on + strand, within GFF1658 at 300.814 kb on + strand, within GFF1658 at 301.030 kb on + strand at 301.030 kb on + strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.281 kb on + strand, within GFF1659 at 301.281 kb on + strand, within GFF1659 at 301.282 kb on - strand, within GFF1659 at 301.282 kb on - strand, within GFF1659 at 301.753 kb on - strand, within GFF1659 at 301.753 kb on - strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.995 kb on + strand, within GFF1659 at 301.995 kb on + strand, within GFF1659 at 302.118 kb on + strand, within GFF1659 at 302.118 kb on + strand, within GFF1659 at 302.118 kb on + strand, within GFF1659 at 302.118 kb on + strand, within GFF1659 at 302.119 kb on - strand, within GFF1659 at 302.119 kb on - strand, within GFF1659 at 302.119 kb on - strand, within GFF1659 at 302.245 kb on + strand at 302.245 kb on + strand at 302.245 kb on + strand at 302.247 kb on + strand at 302.247 kb on + strand at 302.247 kb on + strand at 302.247 kb on + strand at 302.247 kb on + strand at 302.248 kb on - strand at 302.248 kb on - strand at 302.248 kb on - strand at 302.248 kb on - strand at 302.370 kb on + strand at 302.370 kb on + strand at 302.370 kb on + strand at 302.370 kb on + strand at 302.371 kb on - strand at 302.409 kb on + strand at 302.409 kb on + strand at 302.410 kb on - strand at 302.410 kb on - strand at 302.554 kb on - strand, within GFF1660 at 302.554 kb on - strand, within GFF1660 at 302.823 kb on + strand, within GFF1660 at 302.823 kb on + strand, within GFF1660 at 302.823 kb on + strand, within GFF1660 at 302.823 kb on + strand, within GFF1660 at 302.824 kb on - strand, within GFF1660 at 302.824 kb on - strand, within GFF1660 at 302.824 kb on - strand, within GFF1660 at 302.844 kb on + strand, within GFF1660 at 302.844 kb on + strand, within GFF1660 at 302.845 kb on - strand, within GFF1660 at 302.845 kb on - strand, within GFF1660 at 302.845 kb on - strand, within GFF1660 at 302.880 kb on + strand, within GFF1660 at 302.880 kb on + strand, within GFF1660 at 302.880 kb on + strand, within GFF1660 at 302.881 kb on - strand, within GFF1660 at 302.994 kb on + strand, within GFF1660 at 303.102 kb on + strand, within GFF1660 at 303.102 kb on + strand, within GFF1660 at 303.102 kb on + strand, within GFF1660 at 303.102 kb on + strand, within GFF1660 at 303.102 kb on + strand, within GFF1660 at 303.103 kb on - strand, within GFF1660 at 303.103 kb on - strand, within GFF1660 at 303.103 kb on - strand, within GFF1660 at 303.103 kb on - strand, within GFF1660
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 300,138 + +0.6 300,139 - -0.1 300,183 + -0.6 300,409 + GFF1658 0.23 -0.7 300,553 + GFF1658 0.39 +0.9 300,814 + GFF1658 0.69 +1.1 301,030 + -0.2 301,030 + +1.7 301,031 - -0.5 301,031 - +0.4 301,031 - -0.6 301,031 - +0.1 301,031 - -0.4 301,031 - -0.1 301,254 + GFF1659 0.15 -0.5 301,254 + GFF1659 0.15 +0.4 301,254 + GFF1659 0.15 +0.2 301,254 + GFF1659 0.15 -0.3 301,272 + GFF1659 0.16 -1.0 301,272 + GFF1659 0.16 +0.1 301,272 + GFF1659 0.16 -1.4 301,273 - GFF1659 0.16 +1.6 301,273 - GFF1659 0.16 -1.1 301,273 - GFF1659 0.16 -0.0 301,281 + GFF1659 0.17 -2.0 301,281 + GFF1659 0.17 -1.8 301,282 - GFF1659 0.17 +0.2 301,282 - GFF1659 0.17 +0.2 301,753 - GFF1659 0.57 +0.3 301,753 - GFF1659 0.57 +0.1 301,773 + GFF1659 0.59 -0.5 301,773 + GFF1659 0.59 -0.0 301,773 + GFF1659 0.59 +0.1 301,774 - GFF1659 0.59 +0.5 301,774 - GFF1659 0.59 +0.4 301,774 - GFF1659 0.59 -0.3 301,774 - GFF1659 0.59 -1.1 301,774 - GFF1659 0.59 -0.7 301,791 + GFF1659 0.61 -1.5 301,791 + GFF1659 0.61 +0.1 301,791 + GFF1659 0.61 +0.3 301,791 + GFF1659 0.61 +0.3 301,791 + GFF1659 0.61 +0.2 301,792 - GFF1659 0.61 -0.2 301,792 - GFF1659 0.61 +0.6 301,792 - GFF1659 0.61 -0.6 301,792 - GFF1659 0.61 -0.8 301,792 - GFF1659 0.61 -0.6 301,792 - GFF1659 0.61 -1.1 301,995 + GFF1659 0.78 +0.8 301,995 + GFF1659 0.78 +1.2 302,118 + GFF1659 0.89 -0.4 302,118 + GFF1659 0.89 -0.6 302,118 + GFF1659 0.89 +0.3 302,118 + GFF1659 0.89 -0.9 302,119 - GFF1659 0.89 +0.6 302,119 - GFF1659 0.89 +0.7 302,119 - GFF1659 0.89 +0.1 302,245 + -0.1 302,245 + -1.5 302,245 + +1.0 302,247 + -0.4 302,247 + -0.1 302,247 + -1.8 302,247 + +0.4 302,247 + -0.4 302,248 - +1.9 302,248 - +0.1 302,248 - -0.3 302,248 - +1.2 302,370 + +2.3 302,370 + +0.2 302,370 + +0.1 302,370 + +0.7 302,371 - +0.1 302,409 + -1.8 302,409 + -2.0 302,410 - -0.9 302,410 - -0.3 302,554 - GFF1660 0.16 -0.1 302,554 - GFF1660 0.16 +0.1 302,823 + GFF1660 0.31 -0.9 302,823 + GFF1660 0.31 +0.4 302,823 + GFF1660 0.31 +0.5 302,823 + GFF1660 0.31 +0.4 302,824 - GFF1660 0.31 +0.3 302,824 - GFF1660 0.31 +0.5 302,824 - GFF1660 0.31 +0.0 302,844 + GFF1660 0.33 -0.5 302,844 + GFF1660 0.33 +0.7 302,845 - GFF1660 0.33 -0.4 302,845 - GFF1660 0.33 -0.2 302,845 - GFF1660 0.33 -0.1 302,880 + GFF1660 0.35 -0.5 302,880 + GFF1660 0.35 -0.9 302,880 + GFF1660 0.35 -0.3 302,881 - GFF1660 0.35 +0.0 302,994 + GFF1660 0.41 -0.3 303,102 + GFF1660 0.47 -0.5 303,102 + GFF1660 0.47 -0.0 303,102 + GFF1660 0.47 +0.1 303,102 + GFF1660 0.47 +0.4 303,102 + GFF1660 0.47 +0.2 303,103 - GFF1660 0.47 +0.9 303,103 - GFF1660 0.47 +0.1 303,103 - GFF1660 0.47 -0.0 303,103 - GFF1660 0.47 +0.3
Or see this region's nucleotide sequence