Strain Fitness in Variovorax sp. SCN45 around GFF1656

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1654 and GFF1655 are separated by 267 nucleotidesGFF1655 and GFF1656 overlap by 4 nucleotidesGFF1656 and GFF1657 are separated by 40 nucleotides GFF1654 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 293,763 to 295,457 GFF1654 GFF1655 - no description, at 295,725 to 296,444 GFF1655 GFF1656 - hypothetical protein, at 296,441 to 298,957 GFF1656 GFF1657 - Nitronate monooxygenase (EC 1.13.12.16), at 298,998 to 300,119 GFF1657 Position (kb) 296 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2at 295.496 kb on + strandat 295.532 kb on - strandat 295.532 kb on - strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.616 kb on + strandat 295.617 kb on - strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.637 kb on - strandat 295.637 kb on - strandat 295.637 kb on - strandat 295.637 kb on - strandat 296.073 kb on + strand, within GFF1655at 296.145 kb on + strand, within GFF1655at 296.146 kb on - strand, within GFF1655at 296.146 kb on - strand, within GFF1655at 296.203 kb on - strand, within GFF1655at 296.203 kb on - strand, within GFF1655at 296.256 kb on + strand, within GFF1655at 296.256 kb on + strand, within GFF1655at 296.257 kb on - strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.595 kb on - strandat 296.687 kb on + strandat 296.687 kb on + strandat 296.687 kb on + strandat 296.688 kb on - strandat 296.688 kb on - strandat 296.688 kb on - strandat 296.777 kb on + strand, within GFF1656at 296.777 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.075 kb on - strand, within GFF1656at 297.075 kb on - strand, within GFF1656at 297.113 kb on + strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.119 kb on + strand, within GFF1656at 297.119 kb on + strand, within GFF1656at 297.119 kb on + strand, within GFF1656at 297.120 kb on - strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.123 kb on - strand, within GFF1656at 297.123 kb on - strand, within GFF1656at 297.123 kb on - strand, within GFF1656at 297.164 kb on + strand, within GFF1656at 297.164 kb on + strand, within GFF1656at 297.165 kb on - strand, within GFF1656at 297.165 kb on - strand, within GFF1656at 297.185 kb on + strand, within GFF1656at 297.185 kb on + strand, within GFF1656at 297.464 kb on - strand, within GFF1656at 297.467 kb on + strand, within GFF1656at 297.468 kb on - strand, within GFF1656at 297.551 kb on + strand, within GFF1656at 298.196 kb on + strand, within GFF1656at 298.380 kb on + strand, within GFF1656at 298.380 kb on + strand, within GFF1656at 298.380 kb on + strand, within GFF1656at 298.380 kb on + strand, within GFF1656at 298.381 kb on - strand, within GFF1656at 298.381 kb on - strand, within GFF1656at 298.571 kb on + strand, within GFF1656at 298.571 kb on + strand, within GFF1656at 298.571 kb on + strand, within GFF1656at 298.572 kb on - strand, within GFF1656at 298.572 kb on - strand, within GFF1656at 298.646 kb on + strand, within GFF1656at 298.646 kb on + strand, within GFF1656at 298.647 kb on - strand, within GFF1656at 298.647 kb on - strand, within GFF1656at 298.727 kb on + strandat 298.868 kb on + strandat 298.868 kb on + strandat 298.869 kb on - strandat 298.869 kb on - strandat 298.955 kb on + strandat 298.955 kb on + strandat 298.955 kb on + strandat 298.955 kb on + strandat 298.956 kb on - strandat 298.956 kb on - strandat 298.956 kb on - strandat 299.207 kb on - strand, within GFF1657at 299.207 kb on - strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.788 kb on + strand, within GFF1657at 299.789 kb on - strand, within GFF1657at 299.789 kb on - strand, within GFF1657at 299.789 kb on - strand, within GFF1657at 299.789 kb on - strand, within GFF1657

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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295,496 + -0.0
295,532 - +1.1
295,532 - +0.8
295,564 + -0.5
295,564 + -1.0
295,564 + +1.0
295,564 + +0.1
295,564 + +0.5
295,564 + +0.8
295,564 + +0.1
295,564 + -1.2
295,565 - +1.0
295,565 - -0.9
295,565 - +1.1
295,565 - -0.8
295,565 - +1.1
295,565 - +1.9
295,565 - -1.1
295,565 - -0.5
295,565 - -1.1
295,565 - -0.5
295,565 - -0.5
295,565 - -0.5
295,565 - +0.4
295,565 - -0.5
295,565 - -2.0
295,565 - -0.2
295,616 + -1.1
295,617 - +0.9
295,636 + -0.4
295,636 + -0.3
295,636 + -0.1
295,636 + +0.7
295,637 - -0.1
295,637 - +0.0
295,637 - -1.5
295,637 - -0.9
296,073 + GFF1655 0.48 -0.1
296,145 + GFF1655 0.58 -1.3
296,146 - GFF1655 0.58 -1.3
296,146 - GFF1655 0.58 -0.2
296,203 - GFF1655 0.66 +0.6
296,203 - GFF1655 0.66 -0.3
296,256 + GFF1655 0.74 -0.7
296,256 + GFF1655 0.74 -0.7
296,257 - GFF1655 0.74 +0.1
296,259 + GFF1655 0.74 +0.7
296,259 + GFF1655 0.74 +0.2
296,259 + GFF1655 0.74 -0.1
296,259 + GFF1655 0.74 -0.4
296,259 + GFF1655 0.74 -0.6
296,259 + GFF1655 0.74 +0.3
296,260 - GFF1655 0.74 -0.6
296,260 - GFF1655 0.74 +0.3
296,260 - GFF1655 0.74 -0.1
296,334 + GFF1655 0.85 +0.3
296,334 + GFF1655 0.85 -0.2
296,334 + GFF1655 0.85 -1.7
296,334 + GFF1655 0.85 +0.4
296,335 - GFF1655 0.85 -0.4
296,335 - GFF1655 0.85 -0.7
296,335 - GFF1655 0.85 -0.1
296,335 - GFF1655 0.85 +0.1
296,335 - GFF1655 0.85 -0.7
296,595 - -0.6
296,687 + -1.7
296,687 + -1.1
296,687 + +0.1
296,688 - -0.1
296,688 - +0.5
296,688 - -0.1
296,777 + GFF1656 0.13 -0.4
296,777 + GFF1656 0.13 +0.1
296,804 + GFF1656 0.14 -0.1
296,804 + GFF1656 0.14 -0.2
296,804 + GFF1656 0.14 -0.1
296,804 + GFF1656 0.14 +0.3
296,804 + GFF1656 0.14 -0.1
296,804 + GFF1656 0.14 -0.4
296,804 + GFF1656 0.14 -1.2
296,805 - GFF1656 0.14 -1.7
296,805 - GFF1656 0.14 -0.1
296,805 - GFF1656 0.14 +0.3
296,805 - GFF1656 0.14 +0.0
296,805 - GFF1656 0.14 -0.9
297,044 + GFF1656 0.24 -1.5
297,044 + GFF1656 0.24 -0.6
297,044 + GFF1656 0.24 +0.1
297,044 + GFF1656 0.24 -0.0
297,044 + GFF1656 0.24 -0.6
297,044 + GFF1656 0.24 +0.0
297,044 + GFF1656 0.24 +0.0
297,045 - GFF1656 0.24 -1.4
297,045 - GFF1656 0.24 -0.6
297,045 - GFF1656 0.24 -0.9
297,045 - GFF1656 0.24 -0.3
297,045 - GFF1656 0.24 -1.3
297,045 - GFF1656 0.24 +0.3
297,075 - GFF1656 0.25 -0.6
297,075 - GFF1656 0.25 -0.2
297,113 + GFF1656 0.27 +0.4
297,114 - GFF1656 0.27 -0.5
297,114 - GFF1656 0.27 +0.2
297,114 - GFF1656 0.27 -0.5
297,114 - GFF1656 0.27 +1.3
297,114 - GFF1656 0.27 +0.3
297,119 + GFF1656 0.27 +0.3
297,119 + GFF1656 0.27 -0.5
297,119 + GFF1656 0.27 -0.5
297,120 - GFF1656 0.27 -0.9
297,122 + GFF1656 0.27 -0.1
297,122 + GFF1656 0.27 -0.2
297,122 + GFF1656 0.27 +1.1
297,122 + GFF1656 0.27 -1.3
297,123 - GFF1656 0.27 -1.1
297,123 - GFF1656 0.27 -0.2
297,123 - GFF1656 0.27 -0.3
297,164 + GFF1656 0.29 -0.4
297,164 + GFF1656 0.29 +0.0
297,165 - GFF1656 0.29 -0.1
297,165 - GFF1656 0.29 +0.1
297,185 + GFF1656 0.30 +0.3
297,185 + GFF1656 0.30 -2.4
297,464 - GFF1656 0.41 -0.9
297,467 + GFF1656 0.41 -1.1
297,468 - GFF1656 0.41 -1.3
297,551 + GFF1656 0.44 +0.4
298,196 + GFF1656 0.70 -0.1
298,380 + GFF1656 0.77 -0.5
298,380 + GFF1656 0.77 -0.5
298,380 + GFF1656 0.77 +0.0
298,380 + GFF1656 0.77 -0.4
298,381 - GFF1656 0.77 -0.6
298,381 - GFF1656 0.77 +0.0
298,571 + GFF1656 0.85 -0.3
298,571 + GFF1656 0.85 +0.6
298,571 + GFF1656 0.85 -0.6
298,572 - GFF1656 0.85 -0.0
298,572 - GFF1656 0.85 +1.5
298,646 + GFF1656 0.88 +0.1
298,646 + GFF1656 0.88 -0.9
298,647 - GFF1656 0.88 -0.8
298,647 - GFF1656 0.88 -0.6
298,727 + -0.2
298,868 + +0.3
298,868 + -0.5
298,869 - -0.3
298,869 - -0.3
298,955 + -0.3
298,955 + -0.1
298,955 + +0.5
298,955 + -0.3
298,956 - -0.8
298,956 - -0.0
298,956 - +0.1
299,207 - GFF1657 0.19 +0.9
299,207 - GFF1657 0.19 -1.0
299,788 + GFF1657 0.70 -0.3
299,788 + GFF1657 0.70 -0.9
299,788 + GFF1657 0.70 -0.4
299,788 + GFF1657 0.70 +0.1
299,788 + GFF1657 0.70 +0.9
299,788 + GFF1657 0.70 +0.3
299,788 + GFF1657 0.70 +0.1
299,788 + GFF1657 0.70 +0.3
299,789 - GFF1657 0.70 -0.5
299,789 - GFF1657 0.70 -0.2
299,789 - GFF1657 0.70 +0.6
299,789 - GFF1657 0.70 -0.4

Or see this region's nucleotide sequence