Strain Fitness in Variovorax sp. SCN45 around GFF1595

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1592 and GFF1593 are separated by 70 nucleotidesGFF1593 and GFF1594 overlap by 4 nucleotidesGFF1594 and GFF1595 are separated by 115 nucleotidesGFF1595 and GFF1596 are separated by 75 nucleotidesGFF1596 and GFF1597 are separated by 24 nucleotides GFF1592 - Response regulator/GGDEF/EAL domain protein, at 189,849 to 192,089 GFF1592 GFF1593 - no description, at 192,160 to 192,456 GFF1593 GFF1594 - Antitoxin DinJ (binds YafQ toxin), at 192,453 to 192,761 GFF1594 GFF1595 - Transcriptional regulator, AraC family, at 192,877 to 193,851 GFF1595 GFF1596 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 193,927 to 194,745 GFF1596 GFF1597 - Acetolactate synthase large subunit (EC 2.2.1.6), at 194,770 to 196,578 GFF1597 Position (kb) 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 191.982 kb on + strandat 191.982 kb on + strandat 191.982 kb on + strandat 191.983 kb on - strandat 191.983 kb on - strandat 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.340 kb on + strand, within GFF1593at 192.340 kb on + strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.409 kb on + strand, within GFF1593at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.678 kb on - strand, within GFF1594at 192.798 kb on + strandat 192.892 kb on - strandat 192.892 kb on - strandat 192.892 kb on - strandat 192.892 kb on - strandat 193.001 kb on + strand, within GFF1595at 193.059 kb on + strand, within GFF1595at 193.060 kb on - strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.491 kb on - strand, within GFF1595at 193.491 kb on - strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.734 kb on - strand, within GFF1595at 193.837 kb on + strandat 193.895 kb on + strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.937 kb on + strandat 194.117 kb on + strand, within GFF1596at 194.117 kb on + strand, within GFF1596at 194.117 kb on + strand, within GFF1596at 194.118 kb on - strand, within GFF1596at 194.249 kb on + strand, within GFF1596at 194.249 kb on + strand, within GFF1596at 194.250 kb on - strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.456 kb on - strand, within GFF1596at 194.456 kb on - strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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191,982 + -0.3
191,982 + +0.9
191,982 + +0.9
191,983 - +0.6
191,983 - -0.3
192,257 + GFF1593 0.33 +0.7
192,257 + GFF1593 0.33 -0.1
192,257 + GFF1593 0.33 +0.9
192,257 + GFF1593 0.33 -1.0
192,257 + GFF1593 0.33 +0.5
192,257 + GFF1593 0.33 -0.1
192,257 + GFF1593 0.33 +0.3
192,257 + GFF1593 0.33 +0.7
192,257 + GFF1593 0.33 +0.3
192,258 - GFF1593 0.33 +0.2
192,258 - GFF1593 0.33 -0.1
192,258 - GFF1593 0.33 +1.4
192,258 - GFF1593 0.33 -1.4
192,258 - GFF1593 0.33 -0.1
192,340 + GFF1593 0.61 -0.5
192,340 + GFF1593 0.61 -0.1
192,341 - GFF1593 0.61 -0.5
192,341 - GFF1593 0.61 -0.4
192,341 - GFF1593 0.61 -0.6
192,341 - GFF1593 0.61 -1.7
192,341 - GFF1593 0.61 -0.4
192,341 - GFF1593 0.61 +1.0
192,409 + GFF1593 0.84 -0.2
192,677 + GFF1594 0.72 -1.8
192,677 + GFF1594 0.72 -0.7
192,677 + GFF1594 0.72 -1.5
192,677 + GFF1594 0.72 -0.5
192,677 + GFF1594 0.72 -0.6
192,678 - GFF1594 0.73 -2.2
192,798 + -0.9
192,892 - -0.7
192,892 - +0.4
192,892 - -0.5
192,892 - -0.1
193,001 + GFF1595 0.13 -0.9
193,059 + GFF1595 0.19 -0.2
193,060 - GFF1595 0.19 -1.7
193,088 + GFF1595 0.22 +1.2
193,088 + GFF1595 0.22 +0.9
193,088 + GFF1595 0.22 +0.3
193,088 + GFF1595 0.22 -0.2
193,088 + GFF1595 0.22 -0.4
193,089 - GFF1595 0.22 +0.1
193,089 - GFF1595 0.22 -1.1
193,089 - GFF1595 0.22 -0.9
193,089 - GFF1595 0.22 -0.1
193,089 - GFF1595 0.22 -1.3
193,089 - GFF1595 0.22 -1.1
193,089 - GFF1595 0.22 -0.1
193,089 - GFF1595 0.22 +0.6
193,491 - GFF1595 0.63 -1.0
193,491 - GFF1595 0.63 -0.5
193,639 + GFF1595 0.78 -0.2
193,639 + GFF1595 0.78 +0.3
193,639 + GFF1595 0.78 -0.6
193,639 + GFF1595 0.78 -2.9
193,639 + GFF1595 0.78 -0.1
193,639 + GFF1595 0.78 -0.4
193,639 + GFF1595 0.78 -0.6
193,639 + GFF1595 0.78 +0.1
193,639 + GFF1595 0.78 +0.7
193,639 + GFF1595 0.78 -0.3
193,639 + GFF1595 0.78 -0.1
193,639 + GFF1595 0.78 -2.3
193,639 + GFF1595 0.78 -0.6
193,640 - GFF1595 0.78 +0.1
193,640 - GFF1595 0.78 -0.7
193,640 - GFF1595 0.78 -0.9
193,640 - GFF1595 0.78 -0.9
193,640 - GFF1595 0.78 -0.5
193,640 - GFF1595 0.78 -0.7
193,640 - GFF1595 0.78 +0.2
193,640 - GFF1595 0.78 -0.1
193,640 - GFF1595 0.78 +0.9
193,640 - GFF1595 0.78 +1.1
193,640 - GFF1595 0.78 -0.8
193,640 - GFF1595 0.78 +0.1
193,640 - GFF1595 0.78 -0.3
193,640 - GFF1595 0.78 -0.7
193,640 - GFF1595 0.78 +1.3
193,643 + GFF1595 0.79 +0.9
193,643 + GFF1595 0.79 +0.0
193,643 + GFF1595 0.79 -0.7
193,643 + GFF1595 0.79 -0.3
193,643 + GFF1595 0.79 -0.3
193,643 + GFF1595 0.79 -3.0
193,644 - GFF1595 0.79 +0.4
193,644 - GFF1595 0.79 +0.2
193,644 - GFF1595 0.79 +0.4
193,644 - GFF1595 0.79 -0.8
193,644 - GFF1595 0.79 -0.1
193,644 - GFF1595 0.79 -1.4
193,644 - GFF1595 0.79 -0.9
193,734 - GFF1595 0.88 -0.4
193,837 + -0.8
193,895 + +1.1
193,896 - +0.1
193,896 - -0.2
193,896 - -1.5
193,896 - -0.3
193,937 + +0.3
194,117 + GFF1596 0.23 +0.0
194,117 + GFF1596 0.23 +1.9
194,117 + GFF1596 0.23 +1.9
194,118 - GFF1596 0.23 -1.7
194,249 + GFF1596 0.39 -0.1
194,249 + GFF1596 0.39 +0.1
194,250 - GFF1596 0.39 -0.8
194,359 + GFF1596 0.53 -0.4
194,359 + GFF1596 0.53 -0.3
194,359 + GFF1596 0.53 -0.6
194,360 - GFF1596 0.53 -0.3
194,360 - GFF1596 0.53 +1.4
194,360 - GFF1596 0.53 -0.2
194,456 - GFF1596 0.65 -1.7
194,456 - GFF1596 0.65 +0.4
194,530 + GFF1596 0.74 -0.4
194,530 + GFF1596 0.74 -0.7
194,530 + GFF1596 0.74 -0.6
194,530 + GFF1596 0.74 -0.0
194,531 - GFF1596 0.74 -0.7
194,531 - GFF1596 0.74 -0.6
194,531 - GFF1596 0.74 +0.9
194,531 - GFF1596 0.74 -1.6
194,531 - GFF1596 0.74 -0.7
194,531 - GFF1596 0.74 -1.1
194,531 - GFF1596 0.74 -0.2
194,531 - GFF1596 0.74 +0.1
194,531 - GFF1596 0.74 +0.4
194,744 - -0.1

Or see this region's nucleotide sequence