Strain Fitness in Variovorax sp. SCN45 around GFF1586

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1585 and GFF1586 are separated by 4 nucleotidesGFF1586 and GFF1587 are separated by 0 nucleotidesGFF1587 and GFF1588 are separated by 197 nucleotides GFF1585 - Outer membrane porin protein 32 precursor, at 183,831 to 185,048 GFF1585 GFF1586 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 185,053 to 186,078 GFF1586 GFF1587 - no description, at 186,079 to 186,669 GFF1587 GFF1588 - Serine phosphatase RsbU, regulator of sigma subunit, at 186,867 to 188,099 GFF1588 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1at 184.294 kb on - strand, within GFF1585at 184.395 kb on + strand, within GFF1585at 184.396 kb on - strand, within GFF1585at 184.396 kb on - strand, within GFF1585at 184.396 kb on - strand, within GFF1585at 184.425 kb on + strand, within GFF1585at 184.426 kb on - strand, within GFF1585at 184.426 kb on - strand, within GFF1585at 184.440 kb on + strand, within GFF1585at 184.441 kb on - strand, within GFF1585at 184.441 kb on - strand, within GFF1585at 184.441 kb on - strand, within GFF1585at 184.596 kb on + strand, within GFF1585at 184.596 kb on + strand, within GFF1585at 184.597 kb on - strand, within GFF1585at 184.648 kb on - strand, within GFF1585at 184.727 kb on + strand, within GFF1585at 184.728 kb on - strand, within GFF1585at 184.806 kb on + strand, within GFF1585at 184.807 kb on - strand, within GFF1585at 184.807 kb on - strand, within GFF1585at 184.821 kb on + strand, within GFF1585at 184.884 kb on + strand, within GFF1585at 184.884 kb on + strand, within GFF1585at 184.885 kb on - strand, within GFF1585at 184.885 kb on - strand, within GFF1585at 184.885 kb on - strand, within GFF1585at 184.917 kb on + strand, within GFF1585at 184.917 kb on + strand, within GFF1585at 184.918 kb on - strand, within GFF1585at 185.020 kb on - strandat 185.212 kb on + strand, within GFF1586at 185.404 kb on + strand, within GFF1586at 185.404 kb on + strand, within GFF1586at 185.549 kb on + strand, within GFF1586at 185.550 kb on - strand, within GFF1586at 186.052 kb on + strandat 186.170 kb on + strand, within GFF1587at 186.170 kb on + strand, within GFF1587at 186.171 kb on - strand, within GFF1587at 186.171 kb on - strand, within GFF1587at 186.688 kb on + strandat 186.688 kb on + strandat 186.688 kb on + strandat 186.689 kb on - strandat 186.689 kb on - strandat 186.689 kb on - strandat 186.689 kb on - strandat 186.690 kb on + strandat 186.690 kb on + strandat 186.690 kb on + strandat 186.690 kb on + strandat 186.690 kb on + strandat 186.691 kb on - strandat 186.691 kb on - strandat 186.691 kb on - strandat 186.691 kb on - strandat 186.691 kb on - strandat 186.691 kb on - strandat 186.715 kb on + strandat 186.715 kb on + strandat 186.716 kb on - strandat 186.716 kb on - strandat 186.716 kb on - strandat 186.806 kb on + strandat 186.806 kb on + strandat 186.806 kb on + strandat 186.806 kb on + strandat 186.806 kb on + strandat 186.806 kb on + strandat 186.807 kb on - strandat 186.807 kb on - strandat 186.807 kb on - strandat 186.807 kb on - strandat 186.807 kb on - strandat 186.810 kb on + strandat 186.810 kb on + strandat 186.829 kb on - strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.833 kb on + strandat 186.834 kb on - strandat 186.834 kb on - strandat 186.834 kb on - strandat 186.834 kb on - strandat 186.834 kb on - strandat 186.834 kb on - strandat 186.834 kb on - strandat 186.834 kb on - strandat 186.837 kb on + strandat 186.837 kb on + strandat 186.837 kb on + strandat 186.838 kb on - strandat 186.838 kb on - strandat 186.838 kb on - strandat 186.845 kb on + strandat 186.845 kb on + strandat 186.845 kb on + strandat 186.845 kb on + strandat 186.845 kb on + strandat 186.845 kb on + strandat 186.845 kb on + strandat 186.846 kb on - strandat 186.885 kb on + strandat 186.886 kb on - strandat 186.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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184,294 - GFF1585 0.38 -0.2
184,395 + GFF1585 0.46 -0.7
184,396 - GFF1585 0.46 +0.4
184,396 - GFF1585 0.46 +0.3
184,396 - GFF1585 0.46 -0.7
184,425 + GFF1585 0.49 -0.4
184,426 - GFF1585 0.49 +0.1
184,426 - GFF1585 0.49 -0.1
184,440 + GFF1585 0.50 -0.8
184,441 - GFF1585 0.50 -1.5
184,441 - GFF1585 0.50 +1.1
184,441 - GFF1585 0.50 +0.1
184,596 + GFF1585 0.63 +0.3
184,596 + GFF1585 0.63 -0.4
184,597 - GFF1585 0.63 -0.5
184,648 - GFF1585 0.67 -0.0
184,727 + GFF1585 0.74 -2.0
184,728 - GFF1585 0.74 +0.1
184,806 + GFF1585 0.80 -0.6
184,807 - GFF1585 0.80 -1.2
184,807 - GFF1585 0.80 -0.0
184,821 + GFF1585 0.81 -0.7
184,884 + GFF1585 0.86 -1.7
184,884 + GFF1585 0.86 -0.2
184,885 - GFF1585 0.87 +0.4
184,885 - GFF1585 0.87 -0.4
184,885 - GFF1585 0.87 -0.5
184,917 + GFF1585 0.89 -0.3
184,917 + GFF1585 0.89 -0.3
184,918 - GFF1585 0.89 -0.2
185,020 - -0.4
185,212 + GFF1586 0.15 -0.5
185,404 + GFF1586 0.34 +0.0
185,404 + GFF1586 0.34 +0.0
185,549 + GFF1586 0.48 +0.7
185,550 - GFF1586 0.48 +0.5
186,052 + -0.2
186,170 + GFF1587 0.15 -1.0
186,170 + GFF1587 0.15 -0.6
186,171 - GFF1587 0.16 +0.5
186,171 - GFF1587 0.16 +0.8
186,688 + -0.9
186,688 + -0.4
186,688 + +1.0
186,689 - -0.7
186,689 - +0.1
186,689 - +0.3
186,689 - -0.8
186,690 + -0.6
186,690 + +0.0
186,690 + -0.5
186,690 + +1.3
186,690 + -0.2
186,691 - +0.4
186,691 - +0.1
186,691 - +0.2
186,691 - +0.4
186,691 - +0.3
186,691 - -0.4
186,715 + -0.3
186,715 + -0.0
186,716 - -1.1
186,716 - -0.4
186,716 - -1.6
186,806 + -0.2
186,806 + -0.6
186,806 + +1.4
186,806 + -1.2
186,806 + -1.2
186,806 + -0.5
186,807 - -0.8
186,807 - -0.5
186,807 - +0.2
186,807 - -0.5
186,807 - +0.5
186,810 + -0.6
186,810 + +0.7
186,829 - -0.6
186,833 + +1.0
186,833 + -0.3
186,833 + -0.1
186,833 + -0.5
186,833 + -0.5
186,833 + -0.7
186,833 + +0.6
186,833 + +0.4
186,833 + -0.2
186,834 - -0.7
186,834 - +0.5
186,834 - +0.3
186,834 - +0.3
186,834 - -0.9
186,834 - +0.6
186,834 - -0.7
186,834 - +0.4
186,837 + +0.0
186,837 + +0.8
186,837 + +0.7
186,838 - +0.1
186,838 - -2.0
186,838 - -0.4
186,845 + -1.6
186,845 + -0.0
186,845 + -0.1
186,845 + -0.4
186,845 + -0.5
186,845 + +0.1
186,845 + -0.5
186,846 - +1.1
186,885 + -0.3
186,886 - -1.0
186,886 - -1.2

Or see this region's nucleotide sequence