Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1507 and GFF1508 overlap by 4 nucleotides GFF1508 and GFF1509 overlap by 4 nucleotides GFF1509 and GFF1510 overlap by 4 nucleotides
GFF1507 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 99,377 to 101,443
GFF1507
GFF1508 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 101,440 to 102,339
GFF1508
GFF1509 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 102,336 to 103,310
GFF1509
GFF1510 - Oxidoreductase, at 103,307 to 104,797
GFF1510
Position (kb) 101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.668 kb on + strand, within GFF1507 at 100.669 kb on - strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.732 kb on - strand, within GFF1507 at 100.732 kb on - strand, within GFF1507 at 101.546 kb on + strand, within GFF1508 at 101.547 kb on - strand, within GFF1508 at 101.570 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.820 kb on - strand, within GFF1508 at 101.820 kb on - strand, within GFF1508 at 101.822 kb on + strand, within GFF1508 at 101.822 kb on + strand, within GFF1508 at 101.822 kb on + strand, within GFF1508 at 101.823 kb on - strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.880 kb on - strand, within GFF1508 at 101.880 kb on - strand, within GFF1508 at 101.880 kb on - strand, within GFF1508 at 102.074 kb on + strand, within GFF1508 at 102.110 kb on + strand, within GFF1508 at 102.111 kb on - strand, within GFF1508 at 102.111 kb on - strand, within GFF1508 at 102.116 kb on + strand, within GFF1508 at 102.116 kb on + strand, within GFF1508 at 102.116 kb on + strand, within GFF1508 at 102.117 kb on - strand, within GFF1508 at 102.117 kb on - strand, within GFF1508 at 102.185 kb on + strand, within GFF1508 at 102.186 kb on - strand, within GFF1508 at 102.321 kb on - strand at 102.321 kb on - strand at 102.379 kb on + strand at 102.380 kb on - strand at 102.380 kb on - strand at 102.380 kb on - strand at 102.436 kb on + strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.655 kb on + strand, within GFF1509 at 102.656 kb on - strand, within GFF1509 at 102.656 kb on - strand, within GFF1509 at 102.656 kb on - strand, within GFF1509 at 103.120 kb on + strand, within GFF1509
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 100,668 + GFF1507 0.62 -1.1 100,669 - GFF1507 0.63 +0.1 100,731 + GFF1507 0.66 -0.2 100,731 + GFF1507 0.66 +0.0 100,731 + GFF1507 0.66 -3.0 100,731 + GFF1507 0.66 +0.1 100,731 + GFF1507 0.66 +0.2 100,731 + GFF1507 0.66 -0.2 100,731 + GFF1507 0.66 -0.3 100,732 - GFF1507 0.66 +0.1 100,732 - GFF1507 0.66 -0.2 101,546 + GFF1508 0.12 +0.1 101,547 - GFF1508 0.12 -0.2 101,570 + GFF1508 0.14 +0.4 101,771 + GFF1508 0.37 +0.0 101,771 + GFF1508 0.37 -0.9 101,771 + GFF1508 0.37 +0.1 101,771 + GFF1508 0.37 -0.5 101,820 - GFF1508 0.42 -0.8 101,820 - GFF1508 0.42 +1.0 101,822 + GFF1508 0.42 +0.2 101,822 + GFF1508 0.42 -0.2 101,822 + GFF1508 0.42 +0.8 101,823 - GFF1508 0.43 +0.0 101,879 + GFF1508 0.49 +0.0 101,879 + GFF1508 0.49 -0.2 101,879 + GFF1508 0.49 -0.1 101,879 + GFF1508 0.49 +0.0 101,880 - GFF1508 0.49 +0.5 101,880 - GFF1508 0.49 -0.3 101,880 - GFF1508 0.49 -0.2 102,074 + GFF1508 0.70 +0.5 102,110 + GFF1508 0.74 -0.0 102,111 - GFF1508 0.75 +0.6 102,111 - GFF1508 0.75 -0.0 102,116 + GFF1508 0.75 -0.3 102,116 + GFF1508 0.75 +1.8 102,116 + GFF1508 0.75 -0.7 102,117 - GFF1508 0.75 -1.3 102,117 - GFF1508 0.75 +0.1 102,185 + GFF1508 0.83 -0.2 102,186 - GFF1508 0.83 -0.7 102,321 - -0.6 102,321 - -0.5 102,379 + +0.4 102,380 - +0.2 102,380 - -0.2 102,380 - +0.1 102,436 + GFF1509 0.10 -0.2 102,437 - GFF1509 0.10 -0.7 102,437 - GFF1509 0.10 +0.0 102,437 - GFF1509 0.10 -0.9 102,655 + GFF1509 0.33 +0.6 102,656 - GFF1509 0.33 -0.8 102,656 - GFF1509 0.33 -0.8 102,656 - GFF1509 0.33 -0.6 103,120 + GFF1509 0.80 -0.2
Or see this region's nucleotide sequence