Strain Fitness in Variovorax sp. SCN45 around GFF145

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF144 and GFF145 overlap by 17 nucleotidesGFF145 and GFF146 are separated by 297 nucleotides GFF144 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 172,383 to 173,621 GFF144 GFF145 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 173,605 to 174,984 GFF145 GFF146 - hypothetical protein, at 175,282 to 176,145 GFF146 Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 172.798 kb on + strand, within GFF144at 172.798 kb on + strand, within GFF144at 172.798 kb on + strand, within GFF144at 172.799 kb on - strand, within GFF144at 172.822 kb on + strand, within GFF144at 172.822 kb on + strand, within GFF144at 173.037 kb on + strand, within GFF144at 173.037 kb on + strand, within GFF144at 173.038 kb on - strand, within GFF144at 173.038 kb on - strand, within GFF144at 173.038 kb on - strand, within GFF144at 173.140 kb on + strand, within GFF144at 173.262 kb on - strand, within GFF144at 173.263 kb on + strand, within GFF144at 173.263 kb on + strand, within GFF144at 173.264 kb on - strand, within GFF144at 173.264 kb on - strand, within GFF144at 173.264 kb on - strand, within GFF144at 173.264 kb on - strand, within GFF144at 173.264 kb on - strand, within GFF144at 173.455 kb on + strand, within GFF144at 173.455 kb on + strand, within GFF144at 173.717 kb on + strandat 173.717 kb on + strandat 173.717 kb on + strandat 173.718 kb on - strandat 173.732 kb on + strandat 173.732 kb on + strandat 173.732 kb on + strandat 173.733 kb on - strandat 173.733 kb on - strandat 173.733 kb on - strandat 173.733 kb on - strandat 174.003 kb on - strand, within GFF145at 174.003 kb on - strand, within GFF145at 174.003 kb on - strand, within GFF145at 174.003 kb on - strand, within GFF145at 174.056 kb on + strand, within GFF145at 174.056 kb on + strand, within GFF145at 174.056 kb on + strand, within GFF145at 174.056 kb on + strand, within GFF145at 174.056 kb on + strand, within GFF145at 174.057 kb on - strand, within GFF145at 174.057 kb on - strand, within GFF145at 174.057 kb on - strand, within GFF145at 174.057 kb on - strand, within GFF145at 174.057 kb on - strand, within GFF145at 174.095 kb on + strand, within GFF145at 174.095 kb on + strand, within GFF145at 174.095 kb on + strand, within GFF145at 174.193 kb on + strand, within GFF145at 174.194 kb on - strand, within GFF145at 174.194 kb on - strand, within GFF145at 174.459 kb on - strand, within GFF145at 174.518 kb on + strand, within GFF145at 174.518 kb on + strand, within GFF145at 174.519 kb on - strand, within GFF145at 174.519 kb on - strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.632 kb on - strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 175.023 kb on + strandat 175.023 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.317 kb on - strandat 175.317 kb on - strandat 175.317 kb on - strandat 175.397 kb on + strand, within GFF146at 175.529 kb on + strand, within GFF146at 175.530 kb on - strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.820 kb on + strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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172,798 + GFF144 0.33 +0.8
172,798 + GFF144 0.33 -0.7
172,798 + GFF144 0.33 +0.1
172,799 - GFF144 0.34 +0.4
172,822 + GFF144 0.35 -0.8
172,822 + GFF144 0.35 +0.3
173,037 + GFF144 0.53 +1.2
173,037 + GFF144 0.53 +0.4
173,038 - GFF144 0.53 -1.2
173,038 - GFF144 0.53 -0.4
173,038 - GFF144 0.53 -1.0
173,140 + GFF144 0.61 -0.9
173,262 - GFF144 0.71 -0.3
173,263 + GFF144 0.71 +0.5
173,263 + GFF144 0.71 -1.4
173,264 - GFF144 0.71 -1.3
173,264 - GFF144 0.71 +1.1
173,264 - GFF144 0.71 -0.7
173,264 - GFF144 0.71 -0.7
173,264 - GFF144 0.71 -0.5
173,455 + GFF144 0.87 -0.8
173,455 + GFF144 0.87 +0.7
173,717 + -0.0
173,717 + -1.2
173,717 + +0.2
173,718 - -0.3
173,732 + +0.6
173,732 + -0.2
173,732 + -0.6
173,733 - +0.2
173,733 - -0.5
173,733 - -0.0
173,733 - -3.4
174,003 - GFF145 0.29 +1.4
174,003 - GFF145 0.29 +0.3
174,003 - GFF145 0.29 +0.2
174,003 - GFF145 0.29 -1.6
174,056 + GFF145 0.33 -0.6
174,056 + GFF145 0.33 +0.1
174,056 + GFF145 0.33 -0.3
174,056 + GFF145 0.33 -0.3
174,056 + GFF145 0.33 -0.7
174,057 - GFF145 0.33 +1.4
174,057 - GFF145 0.33 -0.2
174,057 - GFF145 0.33 -0.1
174,057 - GFF145 0.33 -0.5
174,057 - GFF145 0.33 -0.6
174,095 + GFF145 0.36 +2.0
174,095 + GFF145 0.36 +1.2
174,095 + GFF145 0.36 +0.3
174,193 + GFF145 0.43 -0.2
174,194 - GFF145 0.43 -1.1
174,194 - GFF145 0.43 +0.1
174,459 - GFF145 0.62 -0.5
174,518 + GFF145 0.66 +1.1
174,518 + GFF145 0.66 +1.0
174,519 - GFF145 0.66 +0.6
174,519 - GFF145 0.66 +1.1
174,629 + GFF145 0.74 -0.3
174,629 + GFF145 0.74 -0.8
174,629 + GFF145 0.74 -0.2
174,629 + GFF145 0.74 -0.7
174,629 + GFF145 0.74 +0.6
174,630 - GFF145 0.74 -0.3
174,630 - GFF145 0.74 -0.5
174,630 - GFF145 0.74 -0.3
174,630 - GFF145 0.74 -1.1
174,630 - GFF145 0.74 -0.6
174,630 - GFF145 0.74 -1.6
174,630 - GFF145 0.74 -1.9
174,632 - GFF145 0.74 +0.2
174,818 + GFF145 0.88 +0.5
174,818 + GFF145 0.88 +0.0
174,818 + GFF145 0.88 +0.8
174,818 + GFF145 0.88 +0.1
174,818 + GFF145 0.88 -0.2
174,819 - GFF145 0.88 -1.2
174,819 - GFF145 0.88 +0.4
174,819 - GFF145 0.88 -0.6
174,819 - GFF145 0.88 +0.1
174,819 - GFF145 0.88 +0.3
174,819 - GFF145 0.88 +0.4
174,819 - GFF145 0.88 -0.2
174,819 - GFF145 0.88 -0.0
175,023 + -0.2
175,023 + -1.4
175,316 + -0.4
175,316 + -1.2
175,316 + +0.8
175,316 + -0.0
175,316 + +1.4
175,316 + +0.0
175,317 - +0.4
175,317 - -0.3
175,317 - +0.2
175,397 + GFF146 0.13 -0.3
175,529 + GFF146 0.29 -1.2
175,530 - GFF146 0.29 +0.3
175,649 + GFF146 0.42 -0.5
175,649 + GFF146 0.42 -1.4
175,649 + GFF146 0.42 +0.2
175,649 + GFF146 0.42 -1.6
175,649 + GFF146 0.42 +0.7
175,650 - GFF146 0.43 -1.7
175,650 - GFF146 0.43 -0.2
175,650 - GFF146 0.43 -1.8
175,650 - GFF146 0.43 +0.3
175,650 - GFF146 0.43 +0.1
175,650 - GFF146 0.43 -1.3
175,650 - GFF146 0.43 +0.4
175,712 + GFF146 0.50 -1.1
175,712 + GFF146 0.50 +0.0
175,712 + GFF146 0.50 +0.1
175,712 + GFF146 0.50 -0.9
175,712 + GFF146 0.50 +0.4
175,712 + GFF146 0.50 +0.1
175,712 + GFF146 0.50 -0.8
175,712 + GFF146 0.50 +0.6
175,712 + GFF146 0.50 +0.2
175,712 + GFF146 0.50 -0.3
175,712 + GFF146 0.50 +0.6
175,713 - GFF146 0.50 +0.4
175,713 - GFF146 0.50 +1.4
175,713 - GFF146 0.50 -1.0
175,713 - GFF146 0.50 -0.4
175,713 - GFF146 0.50 -0.9
175,713 - GFF146 0.50 +0.7
175,713 - GFF146 0.50 +0.4
175,713 - GFF146 0.50 +0.8
175,713 - GFF146 0.50 -1.6
175,713 - GFF146 0.50 +0.3
175,713 - GFF146 0.50 -0.2
175,713 - GFF146 0.50 +0.2
175,713 - GFF146 0.50 +2.0
175,713 - GFF146 0.50 -0.7
175,713 - GFF146 0.50 -0.3
175,713 - GFF146 0.50 +0.5
175,713 - GFF146 0.50 -0.7
175,713 - GFF146 0.50 -0.7
175,715 + GFF146 0.50 -0.8
175,715 + GFF146 0.50 +0.3
175,715 + GFF146 0.50 +0.1
175,715 + GFF146 0.50 -0.3
175,820 + GFF146 0.62 -0.4
175,821 - GFF146 0.62 -2.7
175,821 - GFF146 0.62 +0.3
175,821 - GFF146 0.62 +0.1
175,821 - GFF146 0.62 -0.3

Or see this region's nucleotide sequence