Strain Fitness in Variovorax sp. SCN45 around GFF1419

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
7,545	+		GFF1418	0.22	+0.2
7,545	+		GFF1418	0.22	-1.3
7,546	-		GFF1418	0.22	+0.0
7,734	+		GFF1418	0.42	-0.3
7,734	+		GFF1418	0.42	-0.0
7,734	+		GFF1418	0.42	-1.0
7,734	+		GFF1418	0.42	-0.5
7,734	+		GFF1418	0.42	-0.4
7,734	+		GFF1418	0.42	-0.1
7,734	+		GFF1418	0.42	+0.8
7,735	-		GFF1418	0.42	+0.8
7,735	-		GFF1418	0.42	+0.8
7,735	-		GFF1418	0.42	-0.1
7,735	-		GFF1418	0.42	-1.3
7,735	-		GFF1418	0.42	-1.3
7,735	-		GFF1418	0.42	-1.3
7,735	-		GFF1418	0.42	-0.2
7,735	-		GFF1418	0.42	+0.8
7,735	-		GFF1418	0.42	-0.5
7,735	-		GFF1418	0.42	+0.1
7,735	-		GFF1418	0.42	+0.3
7,735	-		GFF1418	0.42	+0.6
7,914	+		GFF1418	0.62	-1.2
8,035	-		GFF1418	0.75	-1.5
8,035	-		GFF1418	0.75	+0.2
8,064	-		GFF1418	0.78	+0.1
8,100	+		GFF1418	0.82	-1.1
8,100	+		GFF1418	0.82	-1.2
8,100	+		GFF1418	0.82	-0.5
8,101	-		GFF1418	0.82	-1.3
8,191	-				-0.5
8,191	-				+1.4
8,191	-				-2.3
8,191	-				-2.3
8,318	+				-1.0
8,356	+				-0.1
8,487	+				-1.8
8,487	+				+0.4
8,488	-				+0.5
8,488	-				+0.1
8,533	+				+0.1
8,533	+				+0.1
8,533	+				-0.1
8,534	-				-0.2
8,534	-				-0.2
8,574	+				-0.9
9,051	+		GFF1419	0.32	+1.4
9,051	+		GFF1419	0.32	+1.1
9,052	-		GFF1419	0.32	-0.2
9,180	+		GFF1419	0.38	+0.8
9,181	-		GFF1419	0.38	+0.8
9,252	+		GFF1419	0.41	+0.4
9,252	+		GFF1419	0.41	-0.3
9,253	-		GFF1419	0.41	+0.8
9,351	+		GFF1419	0.45	-1.6
9,418	-		GFF1419	0.49	+0.7
9,442	-		GFF1419	0.50	-2.1
9,442	-		GFF1419	0.50	+0.8
9,754	-		GFF1419	0.64	+0.6
9,876	+		GFF1419	0.70	+0.2
9,877	-		GFF1419	0.70	-0.4
9,919	-		GFF1419	0.72	+1.2
10,048	-		GFF1419	0.78	-0.2
10,404	+				+1.0
10,673	+		GFF1420	0.10	-0.3
10,673	+		GFF1420	0.10	+0.1
10,673	+		GFF1420	0.10	+0.0
10,673	+		GFF1420	0.10	-0.5
10,674	-		GFF1420	0.10	+0.3
10,674	-		GFF1420	0.10	+0.8
10,677	-		GFF1420	0.10	+2.2
10,677	-		GFF1420	0.10	+0.1
10,677	-		GFF1420	0.10	-0.4
10,688	+		GFF1420	0.11	-0.9
10,688	+		GFF1420	0.11	-0.7
10,814	+		GFF1420	0.19	+1.4
10,814	+		GFF1420	0.19	+1.4
10,815	-		GFF1420	0.19	-1.1
10,815	-		GFF1420	0.19	-1.3
10,819	-		GFF1420	0.20	-1.2
11,277	-		GFF1420	0.50	+0.7