Strain Fitness in Variovorax sp. SCN45 around GFF1410

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1409 and GFF1410 are separated by 83 nucleotidesGFF1410 and GFF1411 are separated by 381 nucleotides GFF1409 - hypothetical protein, at 755,876 to 756,814 GFF1409 GFF1410 - hypothetical protein, at 756,898 to 757,587 GFF1410 GFF1411 - Two-component transcriptional response regulator, LuxR family, at 757,969 to 758,763 GFF1411 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 756.297 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.603 kb on + strand, within GFF1409at 756.604 kb on - strand, within GFF1409at 756.727 kb on + strandat 756.727 kb on + strandat 756.728 kb on - strandat 756.728 kb on - strandat 756.728 kb on - strandat 756.728 kb on - strandat 756.883 kb on + strandat 756.883 kb on + strandat 756.883 kb on + strandat 756.883 kb on + strandat 756.884 kb on - strandat 756.884 kb on - strandat 756.884 kb on - strandat 757.079 kb on + strand, within GFF1410at 757.079 kb on + strand, within GFF1410at 757.144 kb on - strand, within GFF1410at 757.144 kb on - strand, within GFF1410at 757.197 kb on + strand, within GFF1410at 757.197 kb on + strand, within GFF1410at 757.198 kb on - strand, within GFF1410at 757.198 kb on - strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.220 kb on + strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.221 kb on - strand, within GFF1410at 757.430 kb on + strand, within GFF1410at 757.430 kb on + strand, within GFF1410at 757.430 kb on + strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.431 kb on - strand, within GFF1410at 757.647 kb on - strandat 757.739 kb on - strandat 757.750 kb on - strandat 757.750 kb on - strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.788 kb on + strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.789 kb on - strandat 757.828 kb on - strandat 757.878 kb on + strandat 757.892 kb on + strandat 757.892 kb on + strandat 757.892 kb on + strandat 757.893 kb on - strandat 757.917 kb on + strandat 757.920 kb on + strandat 757.928 kb on - strandat 757.955 kb on - strandat 758.016 kb on + strandat 758.023 kb on + strandat 758.024 kb on - strandat 758.024 kb on - strandat 758.413 kb on + strand, within GFF1411at 758.413 kb on + strand, within GFF1411at 758.414 kb on - strand, within GFF1411at 758.414 kb on - strand, within GFF1411at 758.414 kb on - strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.443 kb on + strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411at 758.444 kb on - strand, within GFF1411

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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756,297 + GFF1409 0.45 -0.9
756,591 + GFF1409 0.76 +0.0
756,591 + GFF1409 0.76 -1.2
756,591 + GFF1409 0.76 -0.6
756,591 + GFF1409 0.76 +0.4
756,591 + GFF1409 0.76 -1.4
756,591 + GFF1409 0.76 -0.5
756,592 - GFF1409 0.76 -0.8
756,592 - GFF1409 0.76 -1.8
756,592 - GFF1409 0.76 +0.5
756,592 - GFF1409 0.76 -0.4
756,592 - GFF1409 0.76 -0.8
756,592 - GFF1409 0.76 -0.9
756,603 + GFF1409 0.77 -0.2
756,604 - GFF1409 0.78 -0.4
756,727 + -0.4
756,727 + -1.3
756,728 - -0.9
756,728 - -0.8
756,728 - -0.4
756,728 - -1.8
756,883 + +0.2
756,883 + -0.6
756,883 + +1.4
756,883 + +0.0
756,884 - -0.6
756,884 - -1.8
756,884 - -0.1
757,079 + GFF1410 0.26 +1.2
757,079 + GFF1410 0.26 -1.7
757,144 - GFF1410 0.36 -0.8
757,144 - GFF1410 0.36 -2.4
757,197 + GFF1410 0.43 -0.2
757,197 + GFF1410 0.43 -0.7
757,198 - GFF1410 0.43 +0.2
757,198 - GFF1410 0.43 -0.2
757,220 + GFF1410 0.47 -0.6
757,220 + GFF1410 0.47 +0.4
757,220 + GFF1410 0.47 -0.5
757,220 + GFF1410 0.47 -0.8
757,220 + GFF1410 0.47 -0.4
757,220 + GFF1410 0.47 -0.6
757,220 + GFF1410 0.47 -0.9
757,221 - GFF1410 0.47 -0.7
757,221 - GFF1410 0.47 +0.7
757,221 - GFF1410 0.47 -0.0
757,221 - GFF1410 0.47 -1.0
757,221 - GFF1410 0.47 -0.5
757,221 - GFF1410 0.47 -0.9
757,221 - GFF1410 0.47 -0.2
757,221 - GFF1410 0.47 -0.5
757,430 + GFF1410 0.77 +0.4
757,430 + GFF1410 0.77 +0.1
757,430 + GFF1410 0.77 -1.5
757,431 - GFF1410 0.77 -0.8
757,431 - GFF1410 0.77 -0.3
757,431 - GFF1410 0.77 -0.7
757,431 - GFF1410 0.77 -0.0
757,431 - GFF1410 0.77 +0.4
757,431 - GFF1410 0.77 +0.2
757,431 - GFF1410 0.77 +0.8
757,647 - +0.8
757,739 - +0.1
757,750 - -0.2
757,750 - -1.3
757,788 + -1.0
757,788 + +0.8
757,788 + +0.1
757,788 + +0.1
757,788 + -1.1
757,788 + -0.3
757,788 + -0.4
757,788 + +0.9
757,788 + -1.9
757,788 + -3.2
757,788 + +0.2
757,788 + -0.1
757,788 + -1.9
757,788 + +1.1
757,788 + -0.4
757,788 + -0.6
757,788 + +0.3
757,788 + +1.1
757,788 + -0.0
757,789 - +0.2
757,789 - +0.1
757,789 - -0.2
757,789 - +0.4
757,789 - -1.0
757,789 - -0.6
757,789 - -0.9
757,789 - -0.9
757,789 - -0.1
757,789 - -0.9
757,789 - +0.3
757,828 - -1.5
757,878 + -0.6
757,892 + +0.5
757,892 + +0.4
757,892 + -0.9
757,893 - -0.6
757,917 + -1.3
757,920 + -0.5
757,928 - -0.6
757,955 - -0.8
758,016 + -0.2
758,023 + -0.0
758,024 - +0.2
758,024 - -0.7
758,413 + GFF1411 0.56 -0.3
758,413 + GFF1411 0.56 -0.3
758,414 - GFF1411 0.56 -0.5
758,414 - GFF1411 0.56 +0.0
758,414 - GFF1411 0.56 -0.5
758,443 + GFF1411 0.60 -0.2
758,443 + GFF1411 0.60 +0.1
758,443 + GFF1411 0.60 -1.4
758,443 + GFF1411 0.60 -0.5
758,443 + GFF1411 0.60 +0.6
758,443 + GFF1411 0.60 -0.9
758,443 + GFF1411 0.60 -1.2
758,443 + GFF1411 0.60 -0.1
758,443 + GFF1411 0.60 +0.3
758,444 - GFF1411 0.60 +0.0
758,444 - GFF1411 0.60 -1.2
758,444 - GFF1411 0.60 +0.1
758,444 - GFF1411 0.60 -0.2
758,444 - GFF1411 0.60 -0.3
758,444 - GFF1411 0.60 -0.6
758,444 - GFF1411 0.60 -0.1
758,444 - GFF1411 0.60 +0.3
758,444 - GFF1411 0.60 +0.6
758,444 - GFF1411 0.60 +2.0
758,444 - GFF1411 0.60 -0.5
758,444 - GFF1411 0.60 -0.7

Or see this region's nucleotide sequence