Strain Fitness in Variovorax sp. SCN45 around GFF1395

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1393 and GFF1394 are separated by 15 nucleotidesGFF1394 and GFF1395 are separated by 3 nucleotidesGFF1395 and GFF1396 are separated by 175 nucleotides GFF1393 - hypothetical protein, at 741,623 to 742,501 GFF1393 GFF1394 - no description, at 742,517 to 743,341 GFF1394 GFF1395 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 743,345 to 743,872 GFF1395 GFF1396 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 744,048 to 745,085 GFF1396 Position (kb) 743 744Strain fitness (log2 ratio) -2 -1 0 1at 742.513 kb on + strandat 742.513 kb on + strandat 742.513 kb on + strandat 742.514 kb on - strandat 742.523 kb on + strandat 742.523 kb on + strandat 742.523 kb on + strandat 742.524 kb on - strandat 742.524 kb on - strandat 742.536 kb on - strandat 742.630 kb on + strand, within GFF1394at 742.637 kb on - strand, within GFF1394at 742.637 kb on - strand, within GFF1394at 742.699 kb on + strand, within GFF1394at 742.700 kb on - strand, within GFF1394at 742.973 kb on + strand, within GFF1394at 742.974 kb on - strand, within GFF1394at 742.974 kb on - strand, within GFF1394at 743.076 kb on + strand, within GFF1394at 743.457 kb on + strand, within GFF1395at 743.457 kb on + strand, within GFF1395at 743.457 kb on + strand, within GFF1395at 743.457 kb on + strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.458 kb on - strand, within GFF1395at 743.577 kb on + strand, within GFF1395at 743.577 kb on + strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.578 kb on - strand, within GFF1395at 743.784 kb on + strand, within GFF1395at 743.784 kb on + strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.785 kb on - strand, within GFF1395at 743.800 kb on - strand, within GFF1395at 743.830 kb on - strandat 743.830 kb on - strandat 743.891 kb on + strandat 743.925 kb on + strandat 743.925 kb on + strandat 743.925 kb on + strandat 743.934 kb on + strandat 743.935 kb on - strandat 744.133 kb on - strandat 744.274 kb on - strand, within GFF1396at 744.274 kb on - strand, within GFF1396at 744.408 kb on + strand, within GFF1396at 744.408 kb on + strand, within GFF1396at 744.423 kb on + strand, within GFF1396at 744.423 kb on + strand, within GFF1396at 744.423 kb on + strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.424 kb on - strand, within GFF1396at 744.525 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.543 kb on + strand, within GFF1396at 744.544 kb on - strand, within GFF1396at 744.544 kb on - strand, within GFF1396at 744.544 kb on - strand, within GFF1396at 744.675 kb on + strand, within GFF1396at 744.675 kb on + strand, within GFF1396at 744.675 kb on + strand, within GFF1396at 744.676 kb on - strand, within GFF1396at 744.676 kb on - strand, within GFF1396at 744.676 kb on - strand, within GFF1396at 744.676 kb on - strand, within GFF1396

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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742,513 + +0.2
742,513 + +0.3
742,513 + -0.2
742,514 - +0.8
742,523 + +0.3
742,523 + -0.6
742,523 + +1.2
742,524 - -0.3
742,524 - -0.1
742,536 - -1.0
742,630 + GFF1394 0.14 -0.1
742,637 - GFF1394 0.15 -1.2
742,637 - GFF1394 0.15 -0.6
742,699 + GFF1394 0.22 +0.9
742,700 - GFF1394 0.22 -0.6
742,973 + GFF1394 0.55 -0.8
742,974 - GFF1394 0.55 -0.5
742,974 - GFF1394 0.55 -0.2
743,076 + GFF1394 0.68 -0.0
743,457 + GFF1395 0.21 +0.2
743,457 + GFF1395 0.21 -1.6
743,457 + GFF1395 0.21 +1.1
743,457 + GFF1395 0.21 +0.7
743,458 - GFF1395 0.21 -0.6
743,458 - GFF1395 0.21 -0.0
743,458 - GFF1395 0.21 +0.0
743,458 - GFF1395 0.21 -1.0
743,458 - GFF1395 0.21 -0.1
743,577 + GFF1395 0.44 -1.2
743,577 + GFF1395 0.44 +0.1
743,578 - GFF1395 0.44 -0.6
743,578 - GFF1395 0.44 -0.1
743,578 - GFF1395 0.44 -2.3
743,578 - GFF1395 0.44 -0.3
743,578 - GFF1395 0.44 +0.1
743,784 + GFF1395 0.83 -1.2
743,784 + GFF1395 0.83 +0.2
743,785 - GFF1395 0.83 -0.2
743,785 - GFF1395 0.83 -0.2
743,785 - GFF1395 0.83 -1.2
743,785 - GFF1395 0.83 -0.9
743,785 - GFF1395 0.83 -1.4
743,785 - GFF1395 0.83 +0.8
743,800 - GFF1395 0.86 +0.4
743,830 - -0.7
743,830 - -1.8
743,891 + +1.0
743,925 + -0.5
743,925 + -0.2
743,925 + -1.2
743,934 + -0.9
743,935 - +0.7
744,133 - -0.4
744,274 - GFF1396 0.22 -0.4
744,274 - GFF1396 0.22 +0.7
744,408 + GFF1396 0.35 -0.3
744,408 + GFF1396 0.35 +0.0
744,423 + GFF1396 0.36 -0.9
744,423 + GFF1396 0.36 +0.1
744,423 + GFF1396 0.36 -1.2
744,424 - GFF1396 0.36 +0.1
744,424 - GFF1396 0.36 +0.2
744,424 - GFF1396 0.36 +0.3
744,424 - GFF1396 0.36 +0.9
744,525 + GFF1396 0.46 -0.6
744,543 + GFF1396 0.48 +1.4
744,543 + GFF1396 0.48 +0.5
744,543 + GFF1396 0.48 +0.2
744,543 + GFF1396 0.48 -0.8
744,543 + GFF1396 0.48 +0.4
744,544 - GFF1396 0.48 -1.8
744,544 - GFF1396 0.48 -1.0
744,544 - GFF1396 0.48 -0.3
744,675 + GFF1396 0.60 -0.8
744,675 + GFF1396 0.60 -1.6
744,675 + GFF1396 0.60 -0.7
744,676 - GFF1396 0.61 -1.4
744,676 - GFF1396 0.61 -0.4
744,676 - GFF1396 0.61 +0.1
744,676 - GFF1396 0.61 -0.3

Or see this region's nucleotide sequence