Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1320 and GFF1321 are separated by 0 nucleotides GFF1321 and GFF1322 are separated by 93 nucleotides
GFF1320 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 655,393 to 657,480
GFF1320
GFF1321 - Probable diguanylate cyclase YeaP, at 657,481 to 658,518
GFF1321
GFF1322 - [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme, at 658,612 to 661,218
GFF1322
Position (kb) 657
658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 656.939 kb on + strand, within GFF1320 at 656.939 kb on + strand, within GFF1320 at 656.939 kb on + strand, within GFF1320 at 656.939 kb on + strand, within GFF1320 at 656.939 kb on + strand, within GFF1320 at 656.939 kb on + strand, within GFF1320 at 656.939 kb on + strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 656.940 kb on - strand, within GFF1320 at 657.056 kb on + strand, within GFF1320 at 657.056 kb on + strand, within GFF1320 at 657.091 kb on + strand, within GFF1320 at 657.091 kb on + strand, within GFF1320 at 657.092 kb on - strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.143 kb on + strand, within GFF1320 at 657.144 kb on - strand, within GFF1320 at 657.144 kb on - strand, within GFF1320 at 657.144 kb on - strand, within GFF1320 at 657.144 kb on - strand, within GFF1320 at 657.144 kb on - strand, within GFF1320 at 657.277 kb on - strand at 657.460 kb on + strand at 657.460 kb on + strand at 657.460 kb on + strand at 657.461 kb on - strand at 657.461 kb on - strand at 657.461 kb on - strand at 657.461 kb on - strand at 657.475 kb on - strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.539 kb on + strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.540 kb on - strand at 657.627 kb on - strand, within GFF1321 at 657.627 kb on - strand, within GFF1321 at 657.669 kb on + strand, within GFF1321 at 657.669 kb on + strand, within GFF1321 at 657.670 kb on - strand, within GFF1321 at 657.670 kb on - strand, within GFF1321 at 657.670 kb on - strand, within GFF1321 at 657.670 kb on - strand, within GFF1321 at 658.004 kb on + strand, within GFF1321 at 658.004 kb on + strand, within GFF1321 at 658.004 kb on + strand, within GFF1321 at 658.004 kb on + strand, within GFF1321 at 658.005 kb on - strand, within GFF1321 at 658.005 kb on - strand, within GFF1321 at 658.005 kb on - strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.196 kb on + strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.197 kb on - strand, within GFF1321 at 658.363 kb on + strand, within GFF1321 at 658.363 kb on + strand, within GFF1321 at 658.363 kb on + strand, within GFF1321 at 658.364 kb on - strand, within GFF1321 at 658.403 kb on + strand, within GFF1321 at 658.403 kb on + strand, within GFF1321 at 658.403 kb on + strand, within GFF1321 at 658.403 kb on + strand, within GFF1321 at 658.403 kb on + strand, within GFF1321 at 658.404 kb on - strand, within GFF1321 at 658.404 kb on - strand, within GFF1321 at 658.525 kb on + strand at 658.525 kb on + strand at 658.526 kb on - strand at 658.781 kb on + strand at 658.781 kb on + strand at 658.781 kb on + strand at 658.781 kb on + strand at 658.782 kb on - strand at 658.782 kb on - strand at 658.782 kb on - strand at 658.982 kb on + strand, within GFF1322 at 658.982 kb on + strand, within GFF1322 at 658.983 kb on - strand, within GFF1322 at 659.031 kb on - strand, within GFF1322 at 659.132 kb on + strand, within GFF1322 at 659.132 kb on + strand, within GFF1322 at 659.133 kb on - strand, within GFF1322 at 659.133 kb on - strand, within GFF1322 at 659.133 kb on - strand, within GFF1322 at 659.285 kb on + strand, within GFF1322 at 659.285 kb on + strand, within GFF1322 at 659.285 kb on + strand, within GFF1322 at 659.285 kb on + strand, within GFF1322 at 659.285 kb on + strand, within GFF1322 at 659.286 kb on - strand, within GFF1322 at 659.286 kb on - strand, within GFF1322 at 659.286 kb on - strand, within GFF1322 at 659.429 kb on + strand, within GFF1322 at 659.429 kb on + strand, within GFF1322 at 659.429 kb on + strand, within GFF1322 at 659.429 kb on + strand, within GFF1322 at 659.429 kb on + strand, within GFF1322 at 659.430 kb on - strand, within GFF1322 at 659.435 kb on + strand, within GFF1322 at 659.435 kb on + strand, within GFF1322 at 659.436 kb on - strand, within GFF1322 at 659.516 kb on + strand, within GFF1322 at 659.516 kb on + strand, within GFF1322 at 659.516 kb on + strand, within GFF1322 at 659.516 kb on + strand, within GFF1322 at 659.517 kb on - strand, within GFF1322 at 659.517 kb on - strand, within GFF1322 at 659.517 kb on - strand, within GFF1322 at 659.517 kb on - strand, within GFF1322 at 659.517 kb on - strand, within GFF1322 at 659.517 kb on - strand, within GFF1322
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 656,939 + GFF1320 0.74 -1.2 656,939 + GFF1320 0.74 -0.0 656,939 + GFF1320 0.74 -0.4 656,939 + GFF1320 0.74 -1.3 656,939 + GFF1320 0.74 +0.8 656,939 + GFF1320 0.74 +1.0 656,939 + GFF1320 0.74 -0.2 656,940 - GFF1320 0.74 -0.2 656,940 - GFF1320 0.74 +0.3 656,940 - GFF1320 0.74 -0.1 656,940 - GFF1320 0.74 +0.1 656,940 - GFF1320 0.74 +0.5 656,940 - GFF1320 0.74 -1.6 656,940 - GFF1320 0.74 -0.6 656,940 - GFF1320 0.74 -0.3 656,940 - GFF1320 0.74 +0.1 656,940 - GFF1320 0.74 -1.8 656,940 - GFF1320 0.74 -0.3 656,940 - GFF1320 0.74 +0.3 657,056 + GFF1320 0.80 +0.2 657,056 + GFF1320 0.80 +0.7 657,091 + GFF1320 0.81 -0.0 657,091 + GFF1320 0.81 +0.2 657,092 - GFF1320 0.81 +1.4 657,143 + GFF1320 0.84 -0.8 657,143 + GFF1320 0.84 +1.8 657,143 + GFF1320 0.84 -0.4 657,143 + GFF1320 0.84 +1.0 657,143 + GFF1320 0.84 -0.2 657,143 + GFF1320 0.84 -1.0 657,143 + GFF1320 0.84 -2.5 657,143 + GFF1320 0.84 -1.4 657,144 - GFF1320 0.84 -0.2 657,144 - GFF1320 0.84 -2.2 657,144 - GFF1320 0.84 +0.2 657,144 - GFF1320 0.84 -1.2 657,144 - GFF1320 0.84 -0.1 657,277 - +0.0 657,460 + -0.5 657,460 + +0.8 657,460 + -0.2 657,461 - -1.2 657,461 - -0.3 657,461 - +0.3 657,461 - +0.0 657,475 - -0.5 657,539 + +0.6 657,539 + +0.1 657,539 + +0.1 657,539 + -0.9 657,539 + +1.4 657,539 + +0.4 657,539 + +0.1 657,539 + -0.1 657,539 + -0.3 657,539 + -0.2 657,539 + -0.2 657,539 + -0.1 657,539 + +0.4 657,539 + +0.7 657,539 + +0.6 657,539 + -0.0 657,539 + -1.0 657,539 + -0.8 657,539 + -0.5 657,539 + -0.1 657,539 + +0.7 657,539 + -0.7 657,539 + -0.4 657,539 + -0.4 657,539 + -0.2 657,540 - +0.3 657,540 - -0.6 657,540 - +3.0 657,540 - +0.3 657,540 - +0.4 657,540 - -1.4 657,540 - -0.5 657,540 - -1.0 657,540 - -0.2 657,540 - -0.8 657,540 - +0.2 657,540 - -0.1 657,540 - +0.9 657,540 - -0.8 657,540 - +0.6 657,540 - +0.3 657,540 - +0.7 657,540 - +1.1 657,540 - +0.3 657,540 - +0.4 657,540 - +0.8 657,540 - +0.2 657,540 - -0.9 657,540 - -0.2 657,540 - -0.2 657,540 - -0.4 657,627 - GFF1321 0.14 -0.5 657,627 - GFF1321 0.14 -1.4 657,669 + GFF1321 0.18 -0.9 657,669 + GFF1321 0.18 -0.5 657,670 - GFF1321 0.18 -0.8 657,670 - GFF1321 0.18 -1.1 657,670 - GFF1321 0.18 -1.2 657,670 - GFF1321 0.18 +0.8 658,004 + GFF1321 0.50 -0.8 658,004 + GFF1321 0.50 -0.6 658,004 + GFF1321 0.50 +0.1 658,004 + GFF1321 0.50 +0.7 658,005 - GFF1321 0.50 -0.7 658,005 - GFF1321 0.50 -0.0 658,005 - GFF1321 0.50 +1.4 658,196 + GFF1321 0.69 -1.3 658,196 + GFF1321 0.69 -0.4 658,196 + GFF1321 0.69 -0.1 658,196 + GFF1321 0.69 -0.0 658,196 + GFF1321 0.69 -0.4 658,196 + GFF1321 0.69 -1.3 658,196 + GFF1321 0.69 +0.1 658,196 + GFF1321 0.69 +0.1 658,196 + GFF1321 0.69 -0.5 658,197 - GFF1321 0.69 +0.4 658,197 - GFF1321 0.69 +0.4 658,197 - GFF1321 0.69 -0.6 658,197 - GFF1321 0.69 -0.6 658,197 - GFF1321 0.69 -0.8 658,197 - GFF1321 0.69 -1.6 658,197 - GFF1321 0.69 -0.5 658,197 - GFF1321 0.69 -1.2 658,363 + GFF1321 0.85 -0.1 658,363 + GFF1321 0.85 +0.4 658,363 + GFF1321 0.85 +0.2 658,364 - GFF1321 0.85 +0.2 658,403 + GFF1321 0.89 -0.7 658,403 + GFF1321 0.89 -0.4 658,403 + GFF1321 0.89 +0.6 658,403 + GFF1321 0.89 -0.9 658,403 + GFF1321 0.89 +0.4 658,404 - GFF1321 0.89 +0.4 658,404 - GFF1321 0.89 +0.7 658,525 + -0.3 658,525 + -0.3 658,526 - -1.0 658,781 + +0.2 658,781 + -0.2 658,781 + -3.3 658,781 + +0.2 658,782 - -1.4 658,782 - +0.2 658,782 - +1.4 658,982 + GFF1322 0.14 -0.5 658,982 + GFF1322 0.14 -0.2 658,983 - GFF1322 0.14 -0.4 659,031 - GFF1322 0.16 -1.0 659,132 + GFF1322 0.20 -1.9 659,132 + GFF1322 0.20 -3.1 659,133 - GFF1322 0.20 -0.6 659,133 - GFF1322 0.20 +0.4 659,133 - GFF1322 0.20 +0.8 659,285 + GFF1322 0.26 +0.7 659,285 + GFF1322 0.26 -0.4 659,285 + GFF1322 0.26 -1.4 659,285 + GFF1322 0.26 +0.4 659,285 + GFF1322 0.26 -1.2 659,286 - GFF1322 0.26 +0.8 659,286 - GFF1322 0.26 -0.5 659,286 - GFF1322 0.26 -1.3 659,429 + GFF1322 0.31 -1.1 659,429 + GFF1322 0.31 -0.7 659,429 + GFF1322 0.31 -0.6 659,429 + GFF1322 0.31 +0.0 659,429 + GFF1322 0.31 -0.7 659,430 - GFF1322 0.31 -0.2 659,435 + GFF1322 0.32 -0.3 659,435 + GFF1322 0.32 -1.0 659,436 - GFF1322 0.32 -1.1 659,516 + GFF1322 0.35 -0.2 659,516 + GFF1322 0.35 -0.3 659,516 + GFF1322 0.35 -0.1 659,516 + GFF1322 0.35 -0.4 659,517 - GFF1322 0.35 +0.4 659,517 - GFF1322 0.35 -2.6 659,517 - GFF1322 0.35 -0.4 659,517 - GFF1322 0.35 -2.0 659,517 - GFF1322 0.35 +1.4 659,517 - GFF1322 0.35 -1.4
Or see this region's nucleotide sequence