Strain Fitness in Variovorax sp. SCN45 around GFF1294

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1293 and GFF1294 overlap by 8 nucleotidesGFF1294 and GFF1295 are separated by 21 nucleotidesGFF1295 and GFF1296 are separated by 117 nucleotides GFF1293 - Macrolide export ATP-binding/permease protein MacB, at 620,084 to 622,093 GFF1293 GFF1294 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 622,086 to 623,495 GFF1294 GFF1295 - FIG00455815: hypothetical protein, at 623,517 to 624,209 GFF1295 GFF1296 - putative lipoprotein, at 624,327 to 625,085 GFF1296 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1at 621.129 kb on + strand, within GFF1293at 621.129 kb on + strand, within GFF1293at 621.129 kb on + strand, within GFF1293at 621.129 kb on + strand, within GFF1293at 621.129 kb on + strand, within GFF1293at 621.130 kb on - strand, within GFF1293at 621.130 kb on - strand, within GFF1293at 621.130 kb on - strand, within GFF1293at 621.130 kb on - strand, within GFF1293at 621.130 kb on - strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.133 kb on + strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.134 kb on - strand, within GFF1293at 621.176 kb on + strand, within GFF1293at 621.176 kb on + strand, within GFF1293at 621.177 kb on - strand, within GFF1293at 621.177 kb on - strand, within GFF1293at 621.177 kb on - strand, within GFF1293at 621.180 kb on + strand, within GFF1293at 621.180 kb on + strand, within GFF1293at 621.180 kb on + strand, within GFF1293at 621.180 kb on + strand, within GFF1293at 621.180 kb on + strand, within GFF1293at 621.180 kb on + strand, within GFF1293at 621.180 kb on + strand, within GFF1293at 621.181 kb on - strand, within GFF1293at 621.181 kb on - strand, within GFF1293at 621.181 kb on - strand, within GFF1293at 621.512 kb on + strand, within GFF1293at 621.921 kb on - strandat 621.921 kb on - strandat 622.195 kb on - strandat 622.357 kb on + strand, within GFF1294at 622.357 kb on + strand, within GFF1294at 622.358 kb on - strand, within GFF1294at 622.358 kb on - strand, within GFF1294at 622.358 kb on - strand, within GFF1294at 622.447 kb on - strand, within GFF1294at 622.447 kb on - strand, within GFF1294at 622.506 kb on + strand, within GFF1294at 622.506 kb on + strand, within GFF1294at 622.507 kb on - strand, within GFF1294at 622.629 kb on + strand, within GFF1294at 622.630 kb on - strand, within GFF1294at 622.644 kb on + strand, within GFF1294at 622.722 kb on + strand, within GFF1294at 622.723 kb on - strand, within GFF1294at 623.026 kb on - strand, within GFF1294at 623.181 kb on + strand, within GFF1294at 623.181 kb on + strand, within GFF1294at 623.181 kb on + strand, within GFF1294at 623.217 kb on + strand, within GFF1294at 623.217 kb on + strand, within GFF1294at 623.218 kb on - strand, within GFF1294at 623.218 kb on - strand, within GFF1294at 623.219 kb on + strand, within GFF1294at 623.219 kb on + strand, within GFF1294at 623.219 kb on + strand, within GFF1294at 623.220 kb on - strand, within GFF1294at 623.220 kb on - strand, within GFF1294at 623.236 kb on + strand, within GFF1294at 623.236 kb on + strand, within GFF1294at 623.457 kb on + strandat 623.457 kb on + strandat 623.457 kb on + strandat 623.546 kb on - strandat 623.770 kb on + strand, within GFF1295at 623.770 kb on + strand, within GFF1295at 623.770 kb on + strand, within GFF1295at 623.771 kb on - strand, within GFF1295at 623.788 kb on + strand, within GFF1295at 623.788 kb on + strand, within GFF1295at 623.788 kb on + strand, within GFF1295at 623.788 kb on + strand, within GFF1295at 623.788 kb on + strand, within GFF1295at 623.788 kb on + strand, within GFF1295at 623.789 kb on - strand, within GFF1295at 623.789 kb on - strand, within GFF1295at 623.789 kb on - strand, within GFF1295at 623.789 kb on - strand, within GFF1295at 623.789 kb on - strand, within GFF1295at 624.061 kb on + strand, within GFF1295at 624.133 kb on + strand, within GFF1295at 624.133 kb on + strand, within GFF1295at 624.133 kb on + strand, within GFF1295at 624.134 kb on - strand, within GFF1295at 624.134 kb on - strand, within GFF1295at 624.211 kb on + strandat 624.211 kb on + strandat 624.211 kb on + strandat 624.211 kb on + strandat 624.211 kb on + strandat 624.211 kb on + strandat 624.211 kb on + strandat 624.211 kb on + strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.259 kb on + strandat 624.259 kb on + strandat 624.259 kb on + strandat 624.260 kb on - strandat 624.407 kb on - strand, within GFF1296

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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621,129 + GFF1293 0.52 -0.5
621,129 + GFF1293 0.52 +0.0
621,129 + GFF1293 0.52 -2.0
621,129 + GFF1293 0.52 -0.2
621,129 + GFF1293 0.52 +0.3
621,130 - GFF1293 0.52 -0.2
621,130 - GFF1293 0.52 +0.3
621,130 - GFF1293 0.52 +0.2
621,130 - GFF1293 0.52 -0.6
621,130 - GFF1293 0.52 -0.1
621,133 + GFF1293 0.52 +0.8
621,133 + GFF1293 0.52 +0.4
621,133 + GFF1293 0.52 +1.0
621,133 + GFF1293 0.52 -0.8
621,133 + GFF1293 0.52 +0.1
621,133 + GFF1293 0.52 +0.3
621,133 + GFF1293 0.52 +0.4
621,133 + GFF1293 0.52 -0.6
621,133 + GFF1293 0.52 -0.1
621,133 + GFF1293 0.52 -1.0
621,133 + GFF1293 0.52 +0.4
621,133 + GFF1293 0.52 -1.8
621,134 - GFF1293 0.52 -1.2
621,134 - GFF1293 0.52 -0.3
621,134 - GFF1293 0.52 -1.2
621,134 - GFF1293 0.52 +1.2
621,134 - GFF1293 0.52 -0.0
621,134 - GFF1293 0.52 -1.4
621,134 - GFF1293 0.52 -0.1
621,134 - GFF1293 0.52 -0.1
621,176 + GFF1293 0.54 +0.2
621,176 + GFF1293 0.54 +0.4
621,177 - GFF1293 0.54 +0.1
621,177 - GFF1293 0.54 -1.2
621,177 - GFF1293 0.54 -0.4
621,180 + GFF1293 0.55 -0.4
621,180 + GFF1293 0.55 -0.2
621,180 + GFF1293 0.55 -0.5
621,180 + GFF1293 0.55 -2.8
621,180 + GFF1293 0.55 -0.4
621,180 + GFF1293 0.55 -0.2
621,180 + GFF1293 0.55 +0.4
621,181 - GFF1293 0.55 -0.4
621,181 - GFF1293 0.55 +0.4
621,181 - GFF1293 0.55 -1.1
621,512 + GFF1293 0.71 -0.6
621,921 - +0.7
621,921 - -0.6
622,195 - -1.7
622,357 + GFF1294 0.19 +0.0
622,357 + GFF1294 0.19 +0.2
622,358 - GFF1294 0.19 -0.3
622,358 - GFF1294 0.19 +0.0
622,358 - GFF1294 0.19 -1.0
622,447 - GFF1294 0.26 -0.8
622,447 - GFF1294 0.26 -0.2
622,506 + GFF1294 0.30 +0.1
622,506 + GFF1294 0.30 -0.9
622,507 - GFF1294 0.30 -0.1
622,629 + GFF1294 0.39 -1.5
622,630 - GFF1294 0.39 +0.0
622,644 + GFF1294 0.40 -0.5
622,722 + GFF1294 0.45 -1.1
622,723 - GFF1294 0.45 -0.5
623,026 - GFF1294 0.67 -0.9
623,181 + GFF1294 0.78 -0.6
623,181 + GFF1294 0.78 +0.1
623,181 + GFF1294 0.78 -0.3
623,217 + GFF1294 0.80 -1.2
623,217 + GFF1294 0.80 -0.4
623,218 - GFF1294 0.80 -1.2
623,218 - GFF1294 0.80 -0.5
623,219 + GFF1294 0.80 +0.2
623,219 + GFF1294 0.80 -0.7
623,219 + GFF1294 0.80 -0.0
623,220 - GFF1294 0.80 -0.0
623,220 - GFF1294 0.80 -0.1
623,236 + GFF1294 0.82 +0.3
623,236 + GFF1294 0.82 -0.3
623,457 + +0.4
623,457 + -0.2
623,457 + -1.5
623,546 - +1.1
623,770 + GFF1295 0.37 +0.3
623,770 + GFF1295 0.37 +0.8
623,770 + GFF1295 0.37 +1.4
623,771 - GFF1295 0.37 -1.1
623,788 + GFF1295 0.39 -0.9
623,788 + GFF1295 0.39 -0.2
623,788 + GFF1295 0.39 -1.4
623,788 + GFF1295 0.39 +1.4
623,788 + GFF1295 0.39 -0.4
623,788 + GFF1295 0.39 -1.7
623,789 - GFF1295 0.39 +0.1
623,789 - GFF1295 0.39 -1.3
623,789 - GFF1295 0.39 -0.6
623,789 - GFF1295 0.39 +1.4
623,789 - GFF1295 0.39 -0.8
624,061 + GFF1295 0.78 +0.4
624,133 + GFF1295 0.89 +0.3
624,133 + GFF1295 0.89 -0.8
624,133 + GFF1295 0.89 -1.2
624,134 - GFF1295 0.89 -0.8
624,134 - GFF1295 0.89 -0.2
624,211 + +1.4
624,211 + -1.4
624,211 + -0.2
624,211 + +0.5
624,211 + -0.8
624,211 + -0.1
624,211 + -0.2
624,211 + -0.7
624,212 - +0.1
624,212 - +0.1
624,212 - +0.3
624,212 - -0.3
624,212 - -0.0
624,212 - -0.3
624,212 - -0.1
624,212 - +1.1
624,212 - -1.8
624,259 + -0.5
624,259 + -0.4
624,259 + +0.0
624,260 - -0.2
624,407 - GFF1296 0.11 -0.9

Or see this region's nucleotide sequence