Strain Fitness in Variovorax sp. SCN45 around GFF1285

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1284 and GFF1285 are separated by 114 nucleotidesGFF1285 and GFF1286 are separated by 21 nucleotidesGFF1286 and GFF1287 overlap by 4 nucleotides GFF1284 - Transcriptional regulator, LysR family, at 612,029 to 612,943 GFF1284 GFF1285 - Alkyl hydroperoxide reductase subunit C-like protein, at 613,058 to 613,699 GFF1285 GFF1286 - FIG00932541: hypothetical protein, at 613,721 to 614,296 GFF1286 GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309 GFF1287 Position (kb) 613 614Strain fitness (log2 ratio) -2 -1 0 1 2at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.222 kb on - strand, within GFF1284at 612.423 kb on + strand, within GFF1284at 612.512 kb on + strand, within GFF1284at 612.513 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.977 kb on + strandat 613.130 kb on + strand, within GFF1285at 613.130 kb on + strand, within GFF1285at 613.130 kb on + strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.475 kb on + strand, within GFF1285at 613.476 kb on - strand, within GFF1285at 613.476 kb on - strand, within GFF1285at 613.667 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 614.123 kb on + strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.420 kb on - strand, within GFF1287at 614.428 kb on + strand, within GFF1287at 614.428 kb on + strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.452 kb on + strand, within GFF1287at 614.452 kb on + strand, within GFF1287at 614.453 kb on - strand, within GFF1287at 614.453 kb on - strand, within GFF1287at 614.453 kb on - strand, within GFF1287

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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612,221 + GFF1284 0.21 +0.3
612,221 + GFF1284 0.21 -0.3
612,221 + GFF1284 0.21 -0.6
612,221 + GFF1284 0.21 +1.0
612,221 + GFF1284 0.21 -0.9
612,221 + GFF1284 0.21 +0.1
612,221 + GFF1284 0.21 -0.6
612,221 + GFF1284 0.21 -0.5
612,222 - GFF1284 0.21 -0.0
612,423 + GFF1284 0.43 -0.4
612,512 + GFF1284 0.53 -0.4
612,513 - GFF1284 0.53 -0.4
612,693 - GFF1284 0.73 +0.3
612,693 - GFF1284 0.73 -1.2
612,764 + GFF1284 0.80 +2.1
612,764 + GFF1284 0.80 +0.7
612,764 + GFF1284 0.80 +0.5
612,764 + GFF1284 0.80 +0.2
612,764 + GFF1284 0.80 -0.8
612,764 + GFF1284 0.80 +0.6
612,764 + GFF1284 0.80 +1.4
612,765 - GFF1284 0.80 +1.4
612,765 - GFF1284 0.80 -0.3
612,765 - GFF1284 0.80 -0.2
612,765 - GFF1284 0.80 +0.4
612,765 - GFF1284 0.80 -0.1
612,765 - GFF1284 0.80 -0.1
612,765 - GFF1284 0.80 -0.9
612,765 - GFF1284 0.80 -0.3
612,977 + -0.3
613,130 + GFF1285 0.11 -0.6
613,130 + GFF1285 0.11 +0.1
613,130 + GFF1285 0.11 -2.3
613,131 - GFF1285 0.11 -0.0
613,131 - GFF1285 0.11 -1.3
613,131 - GFF1285 0.11 -0.4
613,131 - GFF1285 0.11 -0.5
613,382 + GFF1285 0.50 +0.7
613,382 + GFF1285 0.50 -0.5
613,382 + GFF1285 0.50 -0.3
613,382 + GFF1285 0.50 -0.7
613,382 + GFF1285 0.50 -0.6
613,383 - GFF1285 0.51 -0.1
613,383 - GFF1285 0.51 -1.0
613,383 - GFF1285 0.51 +2.2
613,383 - GFF1285 0.51 +0.7
613,433 + GFF1285 0.58 -0.9
613,433 + GFF1285 0.58 -1.5
613,433 + GFF1285 0.58 +0.1
613,434 - GFF1285 0.59 -1.4
613,434 - GFF1285 0.59 -1.0
613,434 - GFF1285 0.59 -1.2
613,475 + GFF1285 0.65 -1.2
613,476 - GFF1285 0.65 +0.4
613,476 - GFF1285 0.65 -0.4
613,667 + -0.9
613,697 + -0.5
613,697 + -2.0
613,697 + -1.8
613,697 + -0.3
613,697 + +0.4
613,697 + -0.2
613,698 - -0.5
613,698 - -0.5
613,698 - +0.2
613,698 - -1.0
613,698 - +0.1
613,698 - +0.4
613,698 - -0.4
613,698 - -0.3
613,698 - -1.4
613,698 - -0.2
613,698 - -0.3
614,123 + GFF1286 0.70 -0.6
614,124 - GFF1286 0.70 +0.1
614,124 - GFF1286 0.70 +0.0
614,124 - GFF1286 0.70 -0.2
614,124 - GFF1286 0.70 -0.6
614,124 - GFF1286 0.70 -1.9
614,124 - GFF1286 0.70 -0.4
614,124 - GFF1286 0.70 -0.0
614,124 - GFF1286 0.70 -0.7
614,398 + GFF1287 0.10 +0.7
614,398 + GFF1287 0.10 -0.6
614,398 + GFF1287 0.10 -0.5
614,398 + GFF1287 0.10 -0.0
614,420 - GFF1287 0.12 +0.4
614,428 + GFF1287 0.13 +0.7
614,428 + GFF1287 0.13 -0.2
614,429 - GFF1287 0.13 -0.8
614,429 - GFF1287 0.13 +0.3
614,429 - GFF1287 0.13 +0.5
614,452 + GFF1287 0.16 +0.8
614,452 + GFF1287 0.16 -0.2
614,453 - GFF1287 0.16 +0.2
614,453 - GFF1287 0.16 +0.5
614,453 - GFF1287 0.16 -0.4

Or see this region's nucleotide sequence