Strain Fitness in Variovorax sp. SCN45 around GFF1122

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1121 and GFF1122 are separated by 4 nucleotidesGFF1122 and GFF1123 overlap by 4 nucleotides GFF1121 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 437,164 to 438,474 GFF1121 GFF1122 - Molybdenum cofactor guanylyltransferase (EC 2.7.7.77), at 438,479 to 439,138 GFF1122 GFF1123 - GTP 3',8-cyclase (EC 4.1.99.22), at 439,135 to 440,292 GFF1123 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.738 kb on - strand, within GFF1121at 437.738 kb on - strand, within GFF1121at 437.796 kb on - strand, within GFF1121at 437.796 kb on - strand, within GFF1121at 437.810 kb on + strand, within GFF1121at 437.810 kb on + strand, within GFF1121at 437.811 kb on - strand, within GFF1121at 437.811 kb on - strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.871 kb on - strand, within GFF1121at 437.871 kb on - strand, within GFF1121at 437.871 kb on - strand, within GFF1121at 438.082 kb on + strand, within GFF1121at 438.082 kb on + strand, within GFF1121at 438.082 kb on + strand, within GFF1121at 438.083 kb on - strand, within GFF1121at 438.083 kb on - strand, within GFF1121at 438.255 kb on - strand, within GFF1121at 438.255 kb on - strand, within GFF1121at 438.435 kb on - strandat 438.564 kb on - strand, within GFF1122at 438.882 kb on + strand, within GFF1122at 438.883 kb on - strand, within GFF1122at 438.883 kb on - strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.990 kb on - strand, within GFF1122at 438.990 kb on - strand, within GFF1122at 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.229 kb on + strandat 439.229 kb on + strandat 439.230 kb on - strandat 439.346 kb on + strand, within GFF1123at 439.346 kb on + strand, within GFF1123at 439.346 kb on + strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.634 kb on + strand, within GFF1123at 439.634 kb on + strand, within GFF1123at 439.634 kb on + strand, within GFF1123at 439.635 kb on - strand, within GFF1123at 439.635 kb on - strand, within GFF1123at 439.651 kb on + strand, within GFF1123at 439.651 kb on + strand, within GFF1123at 439.651 kb on + strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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437,737 + GFF1121 0.44 -0.5
437,737 + GFF1121 0.44 -0.7
437,737 + GFF1121 0.44 -1.0
437,737 + GFF1121 0.44 -1.3
437,737 + GFF1121 0.44 -1.6
437,738 - GFF1121 0.44 +0.3
437,738 - GFF1121 0.44 +0.4
437,796 - GFF1121 0.48 -1.0
437,796 - GFF1121 0.48 -1.6
437,810 + GFF1121 0.49 -0.1
437,810 + GFF1121 0.49 -0.2
437,811 - GFF1121 0.49 -0.6
437,811 - GFF1121 0.49 +0.9
437,870 + GFF1121 0.54 -0.7
437,870 + GFF1121 0.54 +1.2
437,870 + GFF1121 0.54 +0.3
437,870 + GFF1121 0.54 +0.6
437,871 - GFF1121 0.54 -0.1
437,871 - GFF1121 0.54 -1.1
437,871 - GFF1121 0.54 -0.4
438,082 + GFF1121 0.70 +0.2
438,082 + GFF1121 0.70 -0.2
438,082 + GFF1121 0.70 -2.8
438,083 - GFF1121 0.70 -0.3
438,083 - GFF1121 0.70 -0.2
438,255 - GFF1121 0.83 -1.1
438,255 - GFF1121 0.83 -0.4
438,435 - -0.5
438,564 - GFF1122 0.13 -0.4
438,882 + GFF1122 0.61 -0.5
438,883 - GFF1122 0.61 -0.7
438,883 - GFF1122 0.61 -0.8
438,927 + GFF1122 0.68 -0.4
438,927 + GFF1122 0.68 -0.0
438,927 + GFF1122 0.68 +0.5
438,927 + GFF1122 0.68 +0.1
438,927 + GFF1122 0.68 -0.4
438,927 + GFF1122 0.68 -0.8
438,927 + GFF1122 0.68 -0.9
438,928 - GFF1122 0.68 -1.7
438,928 - GFF1122 0.68 -0.5
438,928 - GFF1122 0.68 -0.2
438,928 - GFF1122 0.68 -0.1
438,928 - GFF1122 0.68 -1.5
438,928 - GFF1122 0.68 -0.9
438,928 - GFF1122 0.68 -0.6
438,989 + GFF1122 0.77 -0.8
438,989 + GFF1122 0.77 -0.2
438,989 + GFF1122 0.77 +0.2
438,990 - GFF1122 0.77 -0.3
438,990 - GFF1122 0.77 -0.0
439,148 + +0.6
439,148 + +0.2
439,148 + +0.3
439,148 + +1.1
439,148 + +0.3
439,148 + +0.4
439,148 + -0.3
439,148 + -1.0
439,148 + +0.3
439,148 + -0.0
439,148 + -2.2
439,148 + +0.2
439,148 + -0.4
439,148 + -1.2
439,148 + +0.2
439,148 + -0.8
439,148 + -1.0
439,149 - +0.5
439,149 - +0.4
439,149 - -0.1
439,149 - +0.4
439,149 - -0.3
439,149 - -0.5
439,149 - +0.4
439,229 + +2.3
439,229 + -0.1
439,230 - -2.4
439,346 + GFF1123 0.18 +0.6
439,346 + GFF1123 0.18 +0.0
439,346 + GFF1123 0.18 -0.8
439,347 - GFF1123 0.18 -0.0
439,347 - GFF1123 0.18 +0.3
439,347 - GFF1123 0.18 +0.8
439,347 - GFF1123 0.18 -1.2
439,445 + GFF1123 0.27 -0.2
439,445 + GFF1123 0.27 -0.4
439,445 + GFF1123 0.27 -0.6
439,446 - GFF1123 0.27 -0.4
439,446 - GFF1123 0.27 -0.8
439,446 - GFF1123 0.27 -0.6
439,446 - GFF1123 0.27 +1.5
439,586 + GFF1123 0.39 -0.3
439,586 + GFF1123 0.39 -0.4
439,586 + GFF1123 0.39 -0.5
439,586 + GFF1123 0.39 -3.1
439,586 + GFF1123 0.39 +0.9
439,587 - GFF1123 0.39 +0.1
439,587 - GFF1123 0.39 -0.4
439,587 - GFF1123 0.39 +0.5
439,587 - GFF1123 0.39 -0.4
439,587 - GFF1123 0.39 -1.4
439,587 - GFF1123 0.39 -0.3
439,587 - GFF1123 0.39 +0.1
439,587 - GFF1123 0.39 -0.2
439,587 - GFF1123 0.39 -1.6
439,587 - GFF1123 0.39 +1.0
439,634 + GFF1123 0.43 +0.3
439,634 + GFF1123 0.43 -0.3
439,634 + GFF1123 0.43 -0.8
439,635 - GFF1123 0.43 +1.2
439,635 - GFF1123 0.43 +1.5
439,651 + GFF1123 0.45 -0.5
439,651 + GFF1123 0.45 +1.8
439,651 + GFF1123 0.45 -0.5
439,652 - GFF1123 0.45 -0.1
439,652 - GFF1123 0.45 -1.2
439,652 - GFF1123 0.45 -0.9
439,652 - GFF1123 0.45 -0.3
439,652 - GFF1123 0.45 -0.3
439,652 - GFF1123 0.45 -0.7
439,652 - GFF1123 0.45 -0.1
439,652 - GFF1123 0.45 +0.7
440,069 + GFF1123 0.81 -0.3
440,069 + GFF1123 0.81 -0.8
440,069 + GFF1123 0.81 -0.6
440,069 + GFF1123 0.81 -0.5
440,069 + GFF1123 0.81 -0.7
440,070 - GFF1123 0.81 +0.2
440,070 - GFF1123 0.81 -0.3
440,070 - GFF1123 0.81 -0.5
440,070 - GFF1123 0.81 +0.8
440,070 - GFF1123 0.81 +0.5
440,070 - GFF1123 0.81 -0.6
440,075 + GFF1123 0.81 +1.5
440,075 + GFF1123 0.81 -0.9
440,075 + GFF1123 0.81 -0.0
440,075 + GFF1123 0.81 -0.8
440,075 + GFF1123 0.81 -0.2
440,075 + GFF1123 0.81 -0.7
440,076 - GFF1123 0.81 +0.4
440,076 - GFF1123 0.81 -0.5
440,076 - GFF1123 0.81 -0.1
440,076 - GFF1123 0.81 -0.3
440,108 + GFF1123 0.84 +0.3
440,108 + GFF1123 0.84 -0.0
440,108 + GFF1123 0.84 -0.8
440,108 + GFF1123 0.84 -1.1
440,109 - GFF1123 0.84 -0.3
440,109 - GFF1123 0.84 +1.1
440,109 - GFF1123 0.84 -0.8
440,109 - GFF1123 0.84 -0.3
440,109 - GFF1123 0.84 -0.5
440,109 - GFF1123 0.84 -0.7
440,109 - GFF1123 0.84 +0.1
440,109 - GFF1123 0.84 -0.5
440,109 - GFF1123 0.84 +0.2
440,109 - GFF1123 0.84 +0.0

Or see this region's nucleotide sequence