Experiment: Dextrin from potato starch 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS12590 and HMPREF1181_RS12595 are separated by 315 nucleotides HMPREF1181_RS12595 and HMPREF1181_RS12600 are separated by 3 nucleotides HMPREF1181_RS12600 and HMPREF1181_RS12605 are separated by 87 nucleotides
HMPREF1181_RS12590: HMPREF1181_RS12590 - hypothetical protein, at 525,169 to 528,126
_RS12590
HMPREF1181_RS12595: HMPREF1181_RS12595 - IS66 family insertion sequence hypothetical protein, at 528,442 to 528,783
_RS12595
HMPREF1181_RS12600: HMPREF1181_RS12600 - IS66 family insertion sequence element accessory protein TnpB, at 528,787 to 529,149
_RS12600
HMPREF1181_RS12605: HMPREF1181_RS12605 - IS66 family transposase, at 529,237 to 530,901
_RS12605
Position (kb) 528
529
530 Strain fitness (log2 ratio) -2
-1
0
1 at 527.798 kb on + strand, within HMPREF1181_RS12590 at 527.799 kb on - strand, within HMPREF1181_RS12590 at 527.973 kb on + strand at 527.974 kb on - strand at 528.050 kb on + strand at 528.051 kb on - strand at 528.051 kb on - strand at 528.054 kb on + strand at 528.290 kb on + strand at 528.301 kb on - strand at 528.301 kb on - strand at 528.316 kb on + strand at 528.326 kb on + strand at 528.327 kb on - strand at 528.332 kb on + strand at 528.333 kb on - strand at 528.347 kb on + strand at 528.348 kb on - strand at 528.349 kb on + strand at 528.356 kb on - strand at 528.358 kb on + strand at 528.359 kb on - strand at 528.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/ml (C) remove 527,798 + HMPREF1181_RS12590 0.89 +0.1 527,799 - HMPREF1181_RS12590 0.89 +0.6 527,973 + -2.0 527,974 - -1.2 528,050 + +0.5 528,051 - -0.9 528,051 - +1.3 528,054 + -1.6 528,290 + -2.1 528,301 - +0.5 528,301 - +0.5 528,316 + +0.4 528,326 + +1.3 528,327 - +0.3 528,332 + +0.6 528,333 - -2.0 528,347 + +1.2 528,348 - -0.5 528,349 + -1.4 528,356 - +0.3 528,358 + -1.0 528,359 - -2.1 528,359 - +0.8
Or see this region's nucleotide sequence