Strain Fitness in Variovorax sp. SCN45 around GFF744

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
6,606	+				+0.6
6,693	+				-0.6
6,693	+				-0.5
6,693	+				-0.3
6,694	-				+1.8
6,760	+				-0.0
6,761	-				-1.3
6,907	+		GFF743	0.20	-2.0
6,907	+		GFF743	0.20	-1.1
6,907	+		GFF743	0.20	-1.0
6,907	+		GFF743	0.20	-0.1
6,907	+		GFF743	0.20	-0.6
6,908	-		GFF743	0.20	+0.3
6,908	-		GFF743	0.20	-0.6
6,908	-		GFF743	0.20	+1.4
6,908	-		GFF743	0.20	+0.4
6,908	-		GFF743	0.20	-0.5
6,908	-		GFF743	0.20	-0.5
7,119	-		GFF743	0.51	-0.4
7,391	+		GFF743	0.90	-0.2
7,391	+		GFF743	0.90	-0.7
7,391	+		GFF743	0.90	-0.6
7,392	-				-0.7
7,512	+				-0.1
7,512	+				+0.3
7,512	+				-0.1
7,512	+				-0.2
7,512	+				-1.6
7,513	-				+0.6
7,513	-				+0.1
7,513	-				+0.1
7,513	-				-0.3
7,513	-				-0.2
7,513	-				+0.4
7,513	-				-0.2
7,704	+		GFF744	0.25	-0.6
7,705	-		GFF744	0.25	-0.9
7,797	+		GFF744	0.35	-0.3
7,797	+		GFF744	0.35	-0.8
7,797	+		GFF744	0.35	-0.2
7,797	+		GFF744	0.35	-2.5
7,798	-		GFF744	0.35	-0.7
7,798	-		GFF744	0.35	+1.4
7,798	-		GFF744	0.35	-0.9
8,010	+		GFF744	0.59	+0.3
8,010	+		GFF744	0.59	+0.2
8,010	+		GFF744	0.59	-0.7
8,010	+		GFF744	0.59	-1.0
8,010	+		GFF744	0.59	-0.9
8,010	+		GFF744	0.59	-0.7
8,010	+		GFF744	0.59	-1.9
8,010	+		GFF744	0.59	+0.2
8,010	+		GFF744	0.59	-0.3
8,010	+		GFF744	0.59	-0.9
8,010	+		GFF744	0.59	-1.1
8,011	-		GFF744	0.59	+0.4
8,011	-		GFF744	0.59	+0.2
8,011	-		GFF744	0.59	-0.4
8,011	-		GFF744	0.59	-0.4
8,011	-		GFF744	0.59	-0.3
8,011	-		GFF744	0.59	-1.0
8,011	-		GFF744	0.59	-0.2
8,011	-		GFF744	0.59	-1.0
8,011	-		GFF744	0.59	-0.6
8,011	-		GFF744	0.59	+0.4
8,011	-		GFF744	0.59	-1.4
8,011	-		GFF744	0.59	-0.3
8,011	-		GFF744	0.59	-0.2
8,872	+		GFF745	0.47	-1.0
8,872	+		GFF745	0.47	+0.1
8,872	+		GFF745	0.47	+0.0
8,873	-		GFF745	0.47	+0.2
9,055	+		GFF745	0.65	+0.8
9,055	+		GFF745	0.65	+0.2
9,070	+		GFF745	0.67	+1.9
9,070	+		GFF745	0.67	-1.6
9,070	+		GFF745	0.67	-0.6
9,304	+				-0.2
9,305	-				-0.5