Strain Fitness in Variovorax sp. SCN45 around GFF718

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF716 and GFF717 are separated by 28 nucleotidesGFF717 and GFF718 are separated by 142 nucleotidesGFF718 and GFF719 are separated by 8 nucleotides GFF716 - no description, at 774,955 to 775,608 GFF716 GFF717 - Enoyl-CoA hydratase (EC 4.2.1.17), at 775,637 to 776,428 GFF717 GFF718 - AraC-type DNA-binding domain-containing proteins, at 776,571 to 777,587 GFF718 GFF719 - no description, at 777,596 to 778,591 GFF719 Position (kb) 776 777 778Strain fitness (log2 ratio) -2 -1 0 1at 776.046 kb on + strand, within GFF717at 776.047 kb on - strand, within GFF717at 776.047 kb on - strand, within GFF717at 776.446 kb on + strandat 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.742 kb on + strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.743 kb on - strand, within GFF718at 776.820 kb on + strand, within GFF718at 776.820 kb on + strand, within GFF718at 776.821 kb on - strand, within GFF718at 776.869 kb on - strand, within GFF718at 777.424 kb on + strand, within GFF718at 777.424 kb on + strand, within GFF718at 777.424 kb on + strand, within GFF718at 777.425 kb on - strand, within GFF718at 777.630 kb on + strandat 777.631 kb on - strandat 777.883 kb on - strand, within GFF719at 777.883 kb on - strand, within GFF719at 777.906 kb on + strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.922 kb on - strand, within GFF719at 777.993 kb on + strand, within GFF719at 777.994 kb on - strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.143 kb on + strand, within GFF719at 778.143 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.224 kb on + strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.263 kb on + strand, within GFF719at 778.263 kb on + strand, within GFF719at 778.264 kb on - strand, within GFF719at 778.264 kb on - strand, within GFF719at 778.288 kb on - strand, within GFF719at 778.317 kb on + strand, within GFF719at 778.318 kb on - strand, within GFF719at 778.479 kb on + strand, within GFF719at 778.479 kb on + strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.480 kb on - strand, within GFF719

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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776,046 + GFF717 0.52 -0.2
776,047 - GFF717 0.52 -1.1
776,047 - GFF717 0.52 -0.1
776,446 + -0.4
776,742 + GFF718 0.17 -0.1
776,742 + GFF718 0.17 +0.3
776,742 + GFF718 0.17 -0.5
776,742 + GFF718 0.17 -0.9
776,742 + GFF718 0.17 -1.1
776,742 + GFF718 0.17 -0.1
776,742 + GFF718 0.17 -0.2
776,743 - GFF718 0.17 -1.1
776,743 - GFF718 0.17 +0.3
776,743 - GFF718 0.17 -1.4
776,743 - GFF718 0.17 -2.1
776,820 + GFF718 0.24 -0.5
776,820 + GFF718 0.24 -0.4
776,821 - GFF718 0.25 +0.2
776,869 - GFF718 0.29 -1.5
777,424 + GFF718 0.84 +0.0
777,424 + GFF718 0.84 -1.3
777,424 + GFF718 0.84 -1.1
777,425 - GFF718 0.84 -1.5
777,630 + +0.4
777,631 - +0.0
777,883 - GFF719 0.29 +0.6
777,883 - GFF719 0.29 +1.3
777,906 + GFF719 0.31 -1.3
777,907 - GFF719 0.31 -0.7
777,907 - GFF719 0.31 -0.1
777,907 - GFF719 0.31 +0.2
777,907 - GFF719 0.31 +0.5
777,907 - GFF719 0.31 +0.1
777,922 - GFF719 0.33 -0.9
777,993 + GFF719 0.40 +1.3
777,994 - GFF719 0.40 -0.4
778,074 + GFF719 0.48 +0.1
778,074 + GFF719 0.48 -0.3
778,074 + GFF719 0.48 -0.4
778,074 + GFF719 0.48 +0.3
778,074 + GFF719 0.48 +0.3
778,074 + GFF719 0.48 +0.3
778,074 + GFF719 0.48 -0.5
778,074 + GFF719 0.48 -0.7
778,075 - GFF719 0.48 -0.1
778,075 - GFF719 0.48 -0.0
778,075 - GFF719 0.48 -0.4
778,075 - GFF719 0.48 -1.9
778,075 - GFF719 0.48 -0.3
778,075 - GFF719 0.48 -0.5
778,075 - GFF719 0.48 -0.1
778,075 - GFF719 0.48 -1.1
778,075 - GFF719 0.48 -0.9
778,075 - GFF719 0.48 -0.4
778,143 + GFF719 0.55 -0.5
778,143 + GFF719 0.55 -0.3
778,146 + GFF719 0.55 -2.5
778,146 + GFF719 0.55 -1.1
778,146 + GFF719 0.55 +0.3
778,146 + GFF719 0.55 -1.2
778,146 + GFF719 0.55 -0.5
778,147 - GFF719 0.55 -0.2
778,147 - GFF719 0.55 -0.5
778,147 - GFF719 0.55 +0.3
778,224 + GFF719 0.63 -0.2
778,225 - GFF719 0.63 -1.4
778,225 - GFF719 0.63 -0.1
778,225 - GFF719 0.63 -1.1
778,225 - GFF719 0.63 +0.2
778,263 + GFF719 0.67 -0.5
778,263 + GFF719 0.67 -1.3
778,264 - GFF719 0.67 -1.7
778,264 - GFF719 0.67 -0.7
778,288 - GFF719 0.69 +0.7
778,317 + GFF719 0.72 +0.0
778,318 - GFF719 0.72 -1.3
778,479 + GFF719 0.89 -0.8
778,479 + GFF719 0.89 +0.1
778,480 - GFF719 0.89 -1.7
778,480 - GFF719 0.89 +0.7
778,480 - GFF719 0.89 -1.1

Or see this region's nucleotide sequence