Strain Fitness in Variovorax sp. SCN45 around GFF697

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF696 and GFF697 are separated by 3 nucleotidesGFF697 and GFF698 are separated by 121 nucleotides GFF696 - Glycosyl transferase, group 2 family, at 750,942 to 752,372 GFF696 GFF697 - FIG074102: hypothetical protein, at 752,376 to 753,200 GFF697 GFF698 - Transcriptional regulator, LysR family, at 753,322 to 754,206 GFF698 Position (kb) 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 751.405 kb on - strand, within GFF696at 751.405 kb on - strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.782 kb on + strand, within GFF696at 751.782 kb on + strand, within GFF696at 751.782 kb on + strand, within GFF696at 751.783 kb on - strand, within GFF696at 751.783 kb on - strand, within GFF696at 751.783 kb on - strand, within GFF696at 751.944 kb on + strand, within GFF696at 751.944 kb on + strand, within GFF696at 751.944 kb on + strand, within GFF696at 751.945 kb on - strand, within GFF696at 751.945 kb on - strand, within GFF696at 751.945 kb on - strand, within GFF696at 751.951 kb on - strand, within GFF696at 751.977 kb on + strand, within GFF696at 752.037 kb on + strand, within GFF696at 752.037 kb on + strand, within GFF696at 752.038 kb on - strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.172 kb on + strand, within GFF696at 752.448 kb on + strandat 752.448 kb on + strandat 752.448 kb on + strandat 752.449 kb on - strandat 752.449 kb on - strandat 752.449 kb on - strandat 752.659 kb on + strand, within GFF697at 752.659 kb on + strand, within GFF697at 752.660 kb on - strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.923 kb on + strand, within GFF697at 752.924 kb on - strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.160 kb on + strandat 753.160 kb on + strandat 753.160 kb on + strandat 753.161 kb on - strandat 753.161 kb on - strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.393 kb on - strandat 753.472 kb on + strand, within GFF698at 753.472 kb on + strand, within GFF698at 753.473 kb on - strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.612 kb on - strand, within GFF698at 753.623 kb on + strand, within GFF698at 753.623 kb on + strand, within GFF698at 753.623 kb on + strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.695 kb on + strand, within GFF698at 753.695 kb on + strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.791 kb on + strand, within GFF698at 753.855 kb on - strand, within GFF698at 753.866 kb on + strand, within GFF698at 753.866 kb on + strand, within GFF698at 753.866 kb on + strand, within GFF698at 753.867 kb on - strand, within GFF698at 754.010 kb on + strand, within GFF698

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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751,405 - GFF696 0.32 -0.4
751,405 - GFF696 0.32 +0.7
751,638 + GFF696 0.49 +0.1
751,638 + GFF696 0.49 -0.2
751,638 + GFF696 0.49 -2.5
751,638 + GFF696 0.49 -1.2
751,639 - GFF696 0.49 -0.3
751,639 - GFF696 0.49 +0.9
751,639 - GFF696 0.49 -0.7
751,639 - GFF696 0.49 -1.3
751,639 - GFF696 0.49 -0.6
751,644 + GFF696 0.49 -1.0
751,644 + GFF696 0.49 +0.5
751,644 + GFF696 0.49 -1.6
751,644 + GFF696 0.49 +0.4
751,644 + GFF696 0.49 -1.1
751,644 + GFF696 0.49 -1.5
751,644 + GFF696 0.49 -0.4
751,644 + GFF696 0.49 -0.3
751,644 + GFF696 0.49 -0.2
751,644 + GFF696 0.49 -1.3
751,644 + GFF696 0.49 -0.9
751,645 - GFF696 0.49 -1.4
751,645 - GFF696 0.49 -0.0
751,645 - GFF696 0.49 -0.3
751,645 - GFF696 0.49 -0.9
751,645 - GFF696 0.49 -0.8
751,645 - GFF696 0.49 -0.2
751,645 - GFF696 0.49 +1.6
751,645 - GFF696 0.49 -0.1
751,645 - GFF696 0.49 -0.2
751,645 - GFF696 0.49 +0.2
751,645 - GFF696 0.49 -1.6
751,782 + GFF696 0.59 +1.1
751,782 + GFF696 0.59 -0.3
751,782 + GFF696 0.59 +0.0
751,783 - GFF696 0.59 -0.5
751,783 - GFF696 0.59 +1.0
751,783 - GFF696 0.59 -0.7
751,944 + GFF696 0.70 +0.2
751,944 + GFF696 0.70 -2.9
751,944 + GFF696 0.70 -1.2
751,945 - GFF696 0.70 +1.3
751,945 - GFF696 0.70 -1.5
751,945 - GFF696 0.70 +0.2
751,951 - GFF696 0.71 -0.4
751,977 + GFF696 0.72 -0.5
752,037 + GFF696 0.77 -1.0
752,037 + GFF696 0.77 -0.3
752,038 - GFF696 0.77 -0.7
752,070 + GFF696 0.79 -0.9
752,070 + GFF696 0.79 +1.9
752,070 + GFF696 0.79 +0.2
752,070 + GFF696 0.79 +0.3
752,071 - GFF696 0.79 +0.3
752,071 - GFF696 0.79 -0.6
752,071 - GFF696 0.79 -0.1
752,071 - GFF696 0.79 -0.2
752,071 - GFF696 0.79 -0.2
752,071 - GFF696 0.79 -1.9
752,172 + GFF696 0.86 -0.8
752,448 + +1.9
752,448 + -0.7
752,448 + +0.4
752,449 - +0.6
752,449 - +1.3
752,449 - -0.8
752,659 + GFF697 0.34 -1.3
752,659 + GFF697 0.34 -0.5
752,660 - GFF697 0.34 -0.7
752,794 + GFF697 0.51 -1.1
752,794 + GFF697 0.51 -0.3
752,794 + GFF697 0.51 -0.2
752,795 - GFF697 0.51 -0.7
752,795 - GFF697 0.51 -0.6
752,795 - GFF697 0.51 -1.3
752,795 - GFF697 0.51 -0.5
752,923 + GFF697 0.66 -0.7
752,924 - GFF697 0.66 -3.1
752,935 + GFF697 0.68 -0.5
752,935 + GFF697 0.68 -1.1
752,935 + GFF697 0.68 -0.2
752,935 + GFF697 0.68 -0.1
752,935 + GFF697 0.68 -0.7
752,936 - GFF697 0.68 -0.3
752,936 - GFF697 0.68 -0.7
752,936 - GFF697 0.68 -0.8
752,936 - GFF697 0.68 -0.4
752,960 - GFF697 0.71 +0.9
752,960 - GFF697 0.71 -1.5
752,960 - GFF697 0.71 -0.5
752,965 + GFF697 0.71 -0.9
752,965 + GFF697 0.71 -1.3
752,965 + GFF697 0.71 +0.1
752,965 + GFF697 0.71 -1.1
752,965 + GFF697 0.71 +0.1
752,966 - GFF697 0.72 +0.3
752,966 - GFF697 0.72 +0.9
752,966 - GFF697 0.72 -0.1
752,966 - GFF697 0.72 -0.6
752,966 - GFF697 0.72 -0.1
752,966 - GFF697 0.72 -0.7
752,966 - GFF697 0.72 -0.0
753,100 + GFF697 0.88 -0.2
753,100 + GFF697 0.88 +0.3
753,100 + GFF697 0.88 -1.1
753,101 - GFF697 0.88 -0.7
753,101 - GFF697 0.88 -0.8
753,101 - GFF697 0.88 -0.7
753,101 - GFF697 0.88 -1.7
753,160 + -1.1
753,160 + -0.3
753,160 + -1.1
753,161 - +0.8
753,161 - +2.3
753,377 + +0.3
753,377 + +0.5
753,377 + -0.8
753,377 + -0.3
753,377 + -0.7
753,377 + -0.6
753,377 + +0.0
753,377 + -0.3
753,377 + -1.4
753,377 + -0.6
753,377 + -0.2
753,377 + -0.7
753,377 + +0.5
753,378 - -0.7
753,378 - -0.2
753,378 - +0.3
753,378 - +0.6
753,378 - +0.6
753,378 - -0.7
753,378 - -2.3
753,378 - -1.7
753,378 - -0.0
753,378 - -0.7
753,378 - -0.2
753,378 - -0.5
753,378 - -0.7
753,378 - -0.5
753,378 - -0.6
753,378 - +1.9
753,378 - +0.3
753,393 - +1.9
753,472 + GFF698 0.17 -0.1
753,472 + GFF698 0.17 +0.0
753,473 - GFF698 0.17 -1.4
753,491 + GFF698 0.19 +2.5
753,491 + GFF698 0.19 +0.3
753,491 + GFF698 0.19 +0.3
753,491 + GFF698 0.19 -0.5
753,491 + GFF698 0.19 -0.5
753,491 + GFF698 0.19 -2.1
753,491 + GFF698 0.19 -1.2
753,492 - GFF698 0.19 -0.7
753,492 - GFF698 0.19 -1.9
753,492 - GFF698 0.19 -0.7
753,492 - GFF698 0.19 +0.0
753,492 - GFF698 0.19 +1.9
753,492 - GFF698 0.19 +0.4
753,492 - GFF698 0.19 +1.3
753,492 - GFF698 0.19 -0.3
753,612 - GFF698 0.33 -0.7
753,623 + GFF698 0.34 +1.3
753,623 + GFF698 0.34 -0.6
753,623 + GFF698 0.34 -1.5
753,624 - GFF698 0.34 -0.3
753,624 - GFF698 0.34 -0.2
753,624 - GFF698 0.34 -0.3
753,624 - GFF698 0.34 -0.5
753,695 + GFF698 0.42 -0.5
753,695 + GFF698 0.42 -0.8
753,696 - GFF698 0.42 -0.2
753,696 - GFF698 0.42 +0.1
753,696 - GFF698 0.42 -0.8
753,696 - GFF698 0.42 +0.3
753,696 - GFF698 0.42 -0.5
753,696 - GFF698 0.42 -0.8
753,696 - GFF698 0.42 +0.2
753,791 + GFF698 0.53 -0.7
753,855 - GFF698 0.60 +0.2
753,866 + GFF698 0.61 -0.5
753,866 + GFF698 0.61 -0.6
753,866 + GFF698 0.61 +0.7
753,867 - GFF698 0.62 +1.9
754,010 + GFF698 0.78 +0.5

Or see this region's nucleotide sequence