Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF6876

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
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7,785	+			-1.7
7,785	+			-3.5
7,785	+			-1.2
7,785	+			-1.0
7,785	+			-1.5
7,786	-			-1.1
7,786	-			-0.5
7,858	+			-1.2
7,859	-			-2.4
7,966	+	GFF6875	0.21	-2.9
7,967	-	GFF6875	0.21	-1.9
7,997	+	GFF6875	0.24	-1.9
7,998	-	GFF6875	0.24	-1.0
7,998	-	GFF6875	0.24	-2.4
7,998	-	GFF6875	0.24	+0.8
7,999	-	GFF6875	0.25	-2.5
8,018	+	GFF6875	0.27	-3.2
8,018	+	GFF6875	0.27	-1.9
8,018	+	GFF6875	0.27	-1.4
8,018	+	GFF6875	0.27	-1.0
8,018	+	GFF6875	0.27	-1.2
8,018	+	GFF6875	0.27	-0.5
8,019	-	GFF6875	0.27	-0.5
8,019	-	GFF6875	0.27	-3.7
8,019	-	GFF6875	0.27	-1.7
8,019	-	GFF6875	0.27	-2.9
8,155	+	GFF6875	0.41	-1.5
8,155	+	GFF6875	0.41	-0.8
8,156	-	GFF6875	0.41	-1.2
8,156	-	GFF6875	0.41	-2.3
8,156	-	GFF6875	0.41	-3.0
8,156	-	GFF6875	0.41	-2.3
8,156	-	GFF6875	0.41	-0.8
8,156	-	GFF6875	0.41	-0.7
8,161	+	GFF6875	0.42	-3.8
8,161	+	GFF6875	0.42	-1.5
8,161	+	GFF6875	0.42	-0.5
8,161	+	GFF6875	0.42	-0.5
8,161	+	GFF6875	0.42	-0.8
8,162	-	GFF6875	0.42	-0.2
8,162	-	GFF6875	0.42	-2.2
8,162	-	GFF6875	0.42	-1.2
8,162	-	GFF6875	0.42	-1.2
8,162	-	GFF6875	0.42	-0.8
8,234	+	GFF6875	0.49	-3.1
8,234	+	GFF6875	0.49	-0.8
8,235	-	GFF6875	0.50	-3.0
8,235	-	GFF6875	0.50	-2.0
8,582	+	GFF6875	0.86	-0.8
8,582	+	GFF6875	0.86	-2.0
8,582	+	GFF6875	0.86	-1.7
8,582	+	GFF6875	0.86	-1.9
8,583	-	GFF6875	0.86	-1.7
8,583	-	GFF6875	0.86	+0.8
8,620	+			-1.0
8,727	+			-1.1
8,727	+			-0.9
8,727	+			+0.6
8,727	+			-1.1
8,727	+			-0.9
8,727	+			+0.4
8,727	+			+0.4
8,727	+			+0.1
8,727	+			+1.8
8,727	+			-1.3
8,727	+			-0.1
8,727	+			+0.4
8,728	-			-0.2
8,728	-			-0.8
8,728	-			-1.2
8,728	-			-0.4
8,728	-			-0.5
8,728	-			+0.6
8,728	-			+0.4
8,728	-			-0.8
8,728	-			-0.7
8,728	-			+0.0
8,868	+	GFF6876	0.13	-2.2
8,868	+	GFF6876	0.13	-2.0
8,869	-	GFF6876	0.13	-0.5
8,869	-	GFF6876	0.13	-1.2
8,869	-	GFF6876	0.13	-2.4
8,869	-	GFF6876	0.13	-2.7
8,869	-	GFF6876	0.13	-0.5
8,869	-	GFF6876	0.13	-1.0
8,898	+	GFF6876	0.16	-3.6
8,899	-	GFF6876	0.16	-3.1
8,899	-	GFF6876	0.16	-0.5
8,973	+	GFF6876	0.22	-3.8
8,973	+	GFF6876	0.22	-3.7
8,973	+	GFF6876	0.22	-1.8
8,973	+	GFF6876	0.22	-1.8
8,973	+	GFF6876	0.22	-1.0
8,973	+	GFF6876	0.22	-2.7
8,974	-	GFF6876	0.23	-0.8
8,974	-	GFF6876	0.23	-2.7
8,974	-	GFF6876	0.23	-4.1
8,974	-	GFF6876	0.23	-3.5
8,982	+	GFF6876	0.23	-0.5
8,982	+	GFF6876	0.23	-1.8
8,982	+	GFF6876	0.23	-1.4
8,982	+	GFF6876	0.23	-2.4
8,982	+	GFF6876	0.23	-2.2
8,982	+	GFF6876	0.23	-3.3
8,982	+	GFF6876	0.23	-0.8
8,982	+	GFF6876	0.23	-3.3
8,983	-	GFF6876	0.23	-0.8
8,983	-	GFF6876	0.23	-1.9
8,983	-	GFF6876	0.23	-2.9
8,983	-	GFF6876	0.23	+0.2
8,983	-	GFF6876	0.23	-3.5
8,983	-	GFF6876	0.23	-2.5
8,983	-	GFF6876	0.23	-2.1
8,983	-	GFF6876	0.23	-4.2
8,983	-	GFF6876	0.23	-2.8
9,002	-	GFF6876	0.25	-1.9
9,002	-	GFF6876	0.25	+0.2
9,051	+	GFF6876	0.30	-1.2
9,051	+	GFF6876	0.30	+0.8
9,171	+	GFF6876	0.40	-3.0
9,171	+	GFF6876	0.40	-2.7
9,171	+	GFF6876	0.40	-1.0
9,171	+	GFF6876	0.40	-3.3
9,171	+	GFF6876	0.40	-1.2
9,171	+	GFF6876	0.40	-1.7
9,171	+	GFF6876	0.40	-2.3
9,171	+	GFF6876	0.40	-2.1
9,171	+	GFF6876	0.40	-4.4
9,171	+	GFF6876	0.40	+0.2
9,171	+	GFF6876	0.40	-0.2
9,171	+	GFF6876	0.40	-4.0
9,171	+	GFF6876	0.40	-3.1
9,171	+	GFF6876	0.40	-3.2
9,171	+	GFF6876	0.40	-1.0
9,171	+	GFF6876	0.40	-2.6
9,171	+	GFF6876	0.40	-2.7
9,171	+	GFF6876	0.40	-3.2
9,171	+	GFF6876	0.40	-2.4
9,171	+	GFF6876	0.40	-1.0
9,171	+	GFF6876	0.40	-1.9
9,171	+	GFF6876	0.40	-1.4
9,171	+	GFF6876	0.40	-0.5
9,171	+	GFF6876	0.40	-2.8
9,171	+	GFF6876	0.40	-1.8
9,172	-	GFF6876	0.41	-3.2
9,172	-	GFF6876	0.41	-1.4
9,172	-	GFF6876	0.41	-2.8
9,172	-	GFF6876	0.41	-2.9
9,172	-	GFF6876	0.41	-2.6
9,172	-	GFF6876	0.41	-0.8
9,172	-	GFF6876	0.41	-3.3
9,172	-	GFF6876	0.41	-0.5
9,172	-	GFF6876	0.41	-2.7
9,172	-	GFF6876	0.41	-3.4
9,172	-	GFF6876	0.41	-1.5
9,172	-	GFF6876	0.41	-1.5
9,172	-	GFF6876	0.41	-4.1
9,172	-	GFF6876	0.41	-3.3
9,172	-	GFF6876	0.41	-1.4
9,172	-	GFF6876	0.41	+0.2
9,172	-	GFF6876	0.41	-2.5
9,172	-	GFF6876	0.41	-2.5
9,189	+	GFF6876	0.42	-2.1
9,189	+	GFF6876	0.42	-1.2
9,189	+	GFF6876	0.42	-2.3
9,189	+	GFF6876	0.42	-2.9
9,189	+	GFF6876	0.42	-2.7
9,189	+	GFF6876	0.42	-0.3
9,189	+	GFF6876	0.42	-1.4
9,190	-	GFF6876	0.42	-3.4
9,190	-	GFF6876	0.42	-1.4
9,282	+	GFF6876	0.50	-1.0
9,429	+	GFF6876	0.64	-2.2
9,457	+	GFF6876	0.66	-1.2
9,457	+	GFF6876	0.66	-3.2
9,501	+	GFF6876	0.70	-2.5
9,501	+	GFF6876	0.70	-1.2
9,501	+	GFF6876	0.70	-3.8
9,501	+	GFF6876	0.70	+0.8
9,501	+	GFF6876	0.70	-1.8
9,501	+	GFF6876	0.70	-3.2
9,501	+	GFF6876	0.70	-1.8
9,501	+	GFF6876	0.70	-0.7
9,501	+	GFF6876	0.70	-1.7
9,501	+	GFF6876	0.70	-1.2
9,501	+	GFF6876	0.70	-0.8
9,501	+	GFF6876	0.70	-3.3
9,501	+	GFF6876	0.70	-3.5
9,501	+	GFF6876	0.70	-1.0
9,501	+	GFF6876	0.70	-1.2
9,502	-	GFF6876	0.70	-3.4
9,502	-	GFF6876	0.70	-1.5
9,502	-	GFF6876	0.70	-3.0
9,502	-	GFF6876	0.70	-2.3
9,502	-	GFF6876	0.70	-2.5
9,502	-	GFF6876	0.70	+0.5
9,502	-	GFF6876	0.70	+0.1
9,502	-	GFF6876	0.70	-2.0
9,502	-	GFF6876	0.70	-3.7
9,502	-	GFF6876	0.70	-1.5
9,502	-	GFF6876	0.70	-2.2
9,502	-	GFF6876	0.70	-3.0
9,502	-	GFF6876	0.70	-3.5
9,571	-	GFF6876	0.77	-1.5
9,687	+	GFF6876	0.87	-3.2
9,688	-	GFF6876	0.87	-1.7
10,051	-			-2.2
10,121	-			-3.3
10,121	-			-3.2
10,126	+			-0.8
10,126	+			-4.0
10,126	+			-1.2
10,127	-			-0.5
10,129	+			-0.2
10,129	+			-0.8
10,129	+			-1.0
10,256	+			-2.7
10,256	+			-2.1
10,332	+			-3.0
10,332	+			-1.4
10,332	+			-0.4
10,332	+			-2.7
10,333	-			-4.2
10,333	-			-1.2
10,335	+			-3.5
10,335	+			-2.8
10,336	-			-3.2
10,336	-			-1.0
10,336	-			-1.4
10,336	-			-2.6
10,346	+			-1.2
10,347	-			-3.5
10,347	-			-1.6
10,353	+			-1.7
10,354	-			-1.8
10,358	-			-1.8
10,437	+			-2.8
10,437	+			-1.2
10,437	+			+1.8
10,437	+			-1.5
10,437	+			-1.0
10,437	+			-1.4
10,437	+			-1.9
10,437	+			-0.8
10,437	+			-1.5
10,438	-			-4.0
10,438	-			-1.8
10,438	-			-3.0
10,438	-			-2.3
10,442	+			-0.2
10,504	+	GFF6878	0.13	-0.8
10,504	+	GFF6878	0.13	-2.4
10,504	+	GFF6878	0.13	-1.0
10,504	+	GFF6878	0.13	-2.0
10,504	+	GFF6878	0.13	-0.8
10,505	-	GFF6878	0.13	-2.7
10,505	-	GFF6878	0.13	-4.4
10,505	-	GFF6878	0.13	-1.0
10,505	-	GFF6878	0.13	-2.3
10,505	-	GFF6878	0.13	-4.8
10,535	+	GFF6878	0.15	-3.3
10,535	+	GFF6878	0.15	-1.4
10,536	-	GFF6878	0.15	-2.6
10,536	-	GFF6878	0.15	-2.3
10,536	-	GFF6878	0.15	-0.5
10,557	-	GFF6878	0.16	-3.5
10,596	-	GFF6878	0.19	-2.9
10,659	+	GFF6878	0.23	-3.1
10,660	-	GFF6878	0.23	-3.1
10,684	+	GFF6878	0.24	-1.0
10,750	+	GFF6878	0.28	-1.9
10,750	+	GFF6878	0.28	-0.5
10,750	+	GFF6878	0.28	-2.7
10,750	+	GFF6878	0.28	-2.8
10,751	-	GFF6878	0.28	-1.9
10,757	+	GFF6878	0.29	-2.5
10,757	+	GFF6878	0.29	-2.1
10,757	+	GFF6878	0.29	-2.5
10,758	-	GFF6878	0.29	-2.2
10,758	-	GFF6878	0.29	-1.3
10,758	-	GFF6878	0.29	-0.5
10,758	-	GFF6878	0.29	+0.2
10,758	-	GFF6878	0.29	-3.4
10,758	-	GFF6878	0.29	-2.4
10,758	-	GFF6878	0.29	-0.7
10,758	-	GFF6878	0.29	-3.5
10,758	-	GFF6878	0.29	-3.1
10,797	+	GFF6878	0.31	-1.8
10,797	+	GFF6878	0.31	-0.5
10,797	+	GFF6878	0.31	-0.5
10,797	+	GFF6878	0.31	-2.6
10,797	+	GFF6878	0.31	-0.8
10,797	+	GFF6878	0.31	-1.7
10,797	+	GFF6878	0.31	-2.4
10,797	+	GFF6878	0.31	-2.9
10,797	+	GFF6878	0.31	-3.3
10,797	+	GFF6878	0.31	-2.4
10,797	+	GFF6878	0.31	-3.3
10,797	+	GFF6878	0.31	-3.6
10,797	+	GFF6878	0.31	-1.9
10,797	+	GFF6878	0.31	-1.7
10,797	+	GFF6878	0.31	-2.3
10,798	-	GFF6878	0.31	-2.4
10,798	-	GFF6878	0.31	-2.2
10,798	-	GFF6878	0.31	-4.7
10,798	-	GFF6878	0.31	-1.4
10,798	-	GFF6878	0.31	-2.9
10,798	-	GFF6878	0.31	-4.1
10,798	-	GFF6878	0.31	-0.2

Or see this region's nucleotide sequence