Strain Fitness in Variovorax sp. SCN45 around GFF6871

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
2,013	+				-1.8
2,013	+				-1.3
2,013	+				-1.1
2,013	+				+0.2
2,013	+				-1.5
2,013	+				-1.7
2,013	+				+0.2
2,014	-				-1.4
2,014	-				-0.9
2,014	-				-0.4
2,014	-				-0.1
2,022	+				+1.0
2,022	+				-0.8
2,022	+				+0.4
2,022	+				+0.2
2,023	-				-0.7
2,023	-				-0.8
2,023	-				+0.2
2,023	-				+0.0
2,023	-				-1.8
2,023	-				-1.6
2,056	-				-0.5
2,145	+		GFF6870	0.19	-0.9
2,145	+		GFF6870	0.19	+0.1
2,145	+		GFF6870	0.19	-0.7
2,146	-		GFF6870	0.19	-0.3
2,146	-		GFF6870	0.19	+0.8
2,146	-		GFF6870	0.19	-0.6
2,163	+		GFF6870	0.21	-0.0
2,163	+		GFF6870	0.21	-0.5
2,163	+		GFF6870	0.21	-1.1
2,163	+		GFF6870	0.21	-1.0
2,164	-		GFF6870	0.21	+0.5
2,164	-		GFF6870	0.21	-2.1
2,164	-		GFF6870	0.21	-1.0
2,234	+		GFF6870	0.28	-0.5
2,234	+		GFF6870	0.28	-1.3
2,234	+		GFF6870	0.28	-0.2
2,235	-		GFF6870	0.28	-0.6
2,235	-		GFF6870	0.28	-0.0
2,235	-		GFF6870	0.28	+0.2
2,235	-		GFF6870	0.28	-1.6
2,355	+		GFF6870	0.41	-1.4
2,355	+		GFF6870	0.41	-1.2
2,355	+		GFF6870	0.41	-0.0
2,355	+		GFF6870	0.41	-2.0
2,356	-		GFF6870	0.41	-1.4
2,356	-		GFF6870	0.41	-0.2
2,356	-		GFF6870	0.41	-3.1
2,356	-		GFF6870	0.41	-1.0
2,356	-		GFF6870	0.41	+2.5
2,356	-		GFF6870	0.41	+1.3
2,385	+		GFF6870	0.44	-1.7
2,386	-		GFF6870	0.44	+0.7
2,386	-		GFF6870	0.44	-0.2
2,386	-		GFF6870	0.44	-1.0
2,386	-		GFF6870	0.44	-0.1
2,386	-		GFF6870	0.44	+1.2
2,386	-		GFF6870	0.44	-1.0
2,412	+		GFF6870	0.47	-0.0
2,412	+		GFF6870	0.47	-0.3
2,412	+		GFF6870	0.47	+1.8
2,412	+		GFF6870	0.47	+2.8
2,412	+		GFF6870	0.47	-1.5
2,412	+		GFF6870	0.47	-1.5
2,413	-		GFF6870	0.47	-0.7
2,413	-		GFF6870	0.47	-1.0
2,413	-		GFF6870	0.47	-0.9
2,413	-		GFF6870	0.47	+1.2
2,413	-		GFF6870	0.47	-1.0
2,413	-		GFF6870	0.47	-0.7
2,413	-		GFF6870	0.47	-0.8
2,413	-		GFF6870	0.47	-0.3
2,413	-		GFF6870	0.47	-0.1
2,612	-		GFF6870	0.68	+0.2
2,612	-		GFF6870	0.68	-0.1
2,645	+		GFF6870	0.71	+1.0
2,645	+		GFF6870	0.71	-0.2
2,645	+		GFF6870	0.71	-0.5
2,645	+		GFF6870	0.71	-0.8
2,646	-		GFF6870	0.71	-2.4
2,799	+		GFF6870	0.87	-1.0
2,799	+		GFF6870	0.87	-2.0
2,799	+		GFF6870	0.87	-0.1
2,799	+		GFF6870	0.87	-0.7
2,799	+		GFF6870	0.87	-1.5
2,799	+		GFF6870	0.87	-0.9
2,799	+		GFF6870	0.87	-0.5
2,799	+		GFF6870	0.87	-0.0
2,799	+		GFF6870	0.87	-0.2
2,800	-		GFF6870	0.87	-0.2
2,800	-		GFF6870	0.87	+1.8
2,800	-		GFF6870	0.87	-0.4
2,800	-		GFF6870	0.87	-0.5
2,928	+				+0.8
2,928	+				-0.8
2,928	+				+0.3
2,928	+				-0.8
2,928	+				-0.7
2,929	-				+0.5
2,929	-				-0.5
2,991	+				-1.4
2,991	+				-0.4
2,991	+				+0.6
2,991	+				-1.7
2,992	-				-0.1
2,992	-				-0.7
2,992	-				+0.6
2,992	-				-0.2
2,992	-				-1.9
2,992	-				+1.1
3,000	+				+0.3
3,000	+				-1.5
3,000	+				-0.5
3,000	+				+0.2
3,000	+				-0.8
3,000	+				-1.5
3,000	+				-0.5
3,000	+				-1.1
3,000	+				-0.2
3,000	+				-1.2
3,000	+				-1.8
3,000	+				-0.5
3,000	+				+0.8
3,000	+				-0.8
3,000	+				-1.4
3,000	+				-0.8
3,000	+				-1.7
3,000	+				-1.7
3,000	+				-0.2
3,000	+				+0.1
3,000	+				-1.0
3,000	+				-1.8
3,001	-				-1.4
3,001	-				-0.1
3,001	-				-0.7
3,001	-				-1.1
3,001	-				-0.5
3,001	-				+0.2
3,001	-				-0.9
3,001	-				-0.3
3,001	-				-0.5
3,001	-				-0.2
3,001	-				-0.9
3,001	-				-2.0
3,001	-				-0.4
3,001	-				-0.8
3,001	-				-0.2
3,033	+		GFF6871	0.11	-1.1
3,034	-		GFF6871	0.11	-0.0
3,123	+		GFF6871	0.20	+0.7
3,123	+		GFF6871	0.20	-0.3
3,123	+		GFF6871	0.20	-2.7
3,124	-		GFF6871	0.20	+0.6
3,124	-		GFF6871	0.20	-3.1
3,124	-		GFF6871	0.20	-1.4
3,130	-		GFF6871	0.21	-0.7
3,172	+		GFF6871	0.25	+1.0
3,172	+		GFF6871	0.25	-1.2
3,173	-		GFF6871	0.26	-2.5
3,174	+		GFF6871	0.26	-1.1
3,174	+		GFF6871	0.26	-0.1
3,175	-		GFF6871	0.26	-0.8
3,175	-		GFF6871	0.26	+0.6
3,175	-		GFF6871	0.26	-0.3
3,175	-		GFF6871	0.26	-0.8
3,180	+		GFF6871	0.26	-0.6
3,198	+		GFF6871	0.28	-1.8
3,198	+		GFF6871	0.28	-0.6
3,198	+		GFF6871	0.28	+0.3
3,198	+		GFF6871	0.28	+2.2
3,198	+		GFF6871	0.28	-1.0
3,198	+		GFF6871	0.28	-0.2
3,199	-		GFF6871	0.28	+0.3
3,199	-		GFF6871	0.28	+1.8
3,327	+		GFF6871	0.42	-1.4
3,328	-		GFF6871	0.42	-1.1
3,328	-		GFF6871	0.42	-0.2
3,328	-		GFF6871	0.42	-1.3
3,328	-		GFF6871	0.42	-0.6
3,328	-		GFF6871	0.42	+0.2
3,328	-		GFF6871	0.42	-0.2
3,378	+		GFF6871	0.47	-1.4
3,378	+		GFF6871	0.47	-0.5
3,378	+		GFF6871	0.47	-0.7
3,378	+		GFF6871	0.47	-1.1
3,378	+		GFF6871	0.47	-0.4
3,379	-		GFF6871	0.47	-0.5
3,379	-		GFF6871	0.47	-0.3
3,379	-		GFF6871	0.47	+0.5
3,379	-		GFF6871	0.47	-2.6
3,379	-		GFF6871	0.47	-0.9
3,379	-		GFF6871	0.47	-0.5
3,379	-		GFF6871	0.47	-1.5
3,379	-		GFF6871	0.47	-1.2
3,387	+		GFF6871	0.48	-0.2
3,387	+		GFF6871	0.48	-0.8
3,387	+		GFF6871	0.48	-0.0
3,388	-		GFF6871	0.48	-0.2
3,388	-		GFF6871	0.48	+0.4
3,388	-		GFF6871	0.48	-0.9
3,388	-		GFF6871	0.48	-1.2
3,450	+		GFF6871	0.54	-0.5
3,451	-		GFF6871	0.54	+0.2
3,564	+		GFF6871	0.66	-0.7
3,564	+		GFF6871	0.66	-0.7
3,564	+		GFF6871	0.66	-0.2
3,564	+		GFF6871	0.66	-0.8
3,564	+		GFF6871	0.66	+0.4
3,564	+		GFF6871	0.66	-0.2
3,564	+		GFF6871	0.66	-0.3
3,564	+		GFF6871	0.66	+0.2
3,564	+		GFF6871	0.66	+0.8
3,565	-		GFF6871	0.66	-0.8
3,565	-		GFF6871	0.66	-0.8
3,565	-		GFF6871	0.66	-1.7
3,565	-		GFF6871	0.66	-2.9
3,567	+		GFF6871	0.66	+0.1
3,567	+		GFF6871	0.66	+0.3
3,568	-		GFF6871	0.67	-1.1
3,568	-		GFF6871	0.67	-0.1
3,568	-		GFF6871	0.67	-2.5
3,568	-		GFF6871	0.67	+0.3
3,609	+		GFF6871	0.71	-0.4
3,610	-		GFF6871	0.71	-0.1
3,610	-		GFF6871	0.71	-1.2
3,610	-		GFF6871	0.71	-2.5
3,610	-		GFF6871	0.71	-1.0
3,610	-		GFF6871	0.71	-1.1
3,613	+		GFF6871	0.71	-0.6
3,670	+		GFF6871	0.77	-0.4
3,670	+		GFF6871	0.77	-0.7
3,671	-		GFF6871	0.77	+0.1
3,671	-		GFF6871	0.77	-0.5
3,671	-		GFF6871	0.77	-1.3
3,671	-		GFF6871	0.77	+0.3
3,720	+		GFF6871	0.82	-1.8
3,720	+		GFF6871	0.82	-0.5
3,721	-		GFF6871	0.82	+0.4
3,729	+		GFF6871	0.83	-2.0
3,729	+		GFF6871	0.83	-1.6
3,729	+		GFF6871	0.83	-1.4
3,729	+		GFF6871	0.83	-1.4
3,729	+		GFF6871	0.83	-1.1
3,729	+		GFF6871	0.83	-0.1
3,729	+		GFF6871	0.83	-1.2
3,729	+		GFF6871	0.83	-1.5
3,729	+		GFF6871	0.83	-0.3
3,730	-		GFF6871	0.83	-0.0
3,730	-		GFF6871	0.83	+0.4
3,730	-		GFF6871	0.83	-0.8
3,730	-		GFF6871	0.83	-1.8
3,730	-		GFF6871	0.83	-0.9
3,730	-		GFF6871	0.83	-0.7
3,768	+		GFF6871	0.87	-0.1
3,769	-		GFF6871	0.87	-0.7
4,005	-		GFF6872	0.16	-2.2
4,005	-		GFF6872	0.16	-1.2
4,005	-		GFF6872	0.16	-1.0
4,071	-		GFF6872	0.26	+0.8
4,071	-		GFF6872	0.26	-0.5
4,071	-		GFF6872	0.26	-0.5
4,100	+		GFF6872	0.30	-1.0
4,100	+		GFF6872	0.30	-2.2
4,100	+		GFF6872	0.30	-1.5
4,100	+		GFF6872	0.30	+0.2
4,100	+		GFF6872	0.30	-2.0
4,100	+		GFF6872	0.30	-0.8
4,100	+		GFF6872	0.30	+0.5
4,100	+		GFF6872	0.30	-0.2
4,100	+		GFF6872	0.30	-0.5
4,100	+		GFF6872	0.30	-1.2
4,100	+		GFF6872	0.30	-0.6
4,100	+		GFF6872	0.30	+0.2
4,100	+		GFF6872	0.30	-1.3
4,100	+		GFF6872	0.30	+0.7
4,100	+		GFF6872	0.30	-0.5
4,101	-		GFF6872	0.30	-1.6
4,101	-		GFF6872	0.30	-1.0
4,101	-		GFF6872	0.30	-1.3
4,101	-		GFF6872	0.30	-3.1
4,101	-		GFF6872	0.30	-0.6
4,101	-		GFF6872	0.30	-0.7
4,101	-		GFF6872	0.30	-2.1
4,101	-		GFF6872	0.30	-0.5
4,101	-		GFF6872	0.30	+0.3
4,105	-		GFF6872	0.30	-1.7
4,105	-		GFF6872	0.30	+1.1
4,211	+		GFF6872	0.46	-0.8
4,211	+		GFF6872	0.46	-2.7
4,211	+		GFF6872	0.46	-3.0
4,211	+		GFF6872	0.46	-0.5
4,211	+		GFF6872	0.46	-1.3
4,212	-		GFF6872	0.46	-0.5
4,212	-		GFF6872	0.46	-0.5
4,244	+		GFF6872	0.50	+1.3
4,244	+		GFF6872	0.50	+0.2
4,245	-		GFF6872	0.51	-3.9
4,245	-		GFF6872	0.51	-1.9
4,245	-		GFF6872	0.51	-0.9
4,310	+		GFF6872	0.60	-0.6
4,490	+		GFF6872	0.86	+0.6
4,491	-		GFF6872	0.86	-1.1
4,491	-		GFF6872	0.86	-0.4
4,491	-		GFF6872	0.86	-0.5
4,505	+		GFF6872	0.88	-0.0
4,506	-		GFF6872	0.88	-0.9
4,544	+				+0.2
4,545	-				+0.6
4,553	+				+0.1
4,553	+				+1.8
4,554	-				-0.4
4,554	-				+1.2
4,554	-				+1.4
4,554	-				-1.4
4,554	-				-0.3
4,554	-				-2.0
4,565	+				-1.4
4,566	-				-1.5
4,566	-				-2.3
4,677	+				+0.6
4,678	-				-0.4
4,758	+		GFF6873	0.13	-1.2
4,758	+		GFF6873	0.13	-0.8
4,758	+		GFF6873	0.13	-1.0
4,758	+		GFF6873	0.13	+0.0
4,758	+		GFF6873	0.13	-1.0
4,758	+		GFF6873	0.13	-0.1
4,759	-		GFF6873	0.13	+0.5
4,759	-		GFF6873	0.13	-1.0
4,759	-		GFF6873	0.13	-1.1
4,759	-		GFF6873	0.13	+0.6
4,759	-		GFF6873	0.13	+0.2
4,759	-		GFF6873	0.13	+0.4
4,785	+		GFF6873	0.15	-0.3
4,786	-		GFF6873	0.15	+0.5
4,791	+		GFF6873	0.16	-0.3
4,792	-		GFF6873	0.16	-0.1
4,792	-		GFF6873	0.16	-0.6
4,830	+		GFF6873	0.19	-1.1
4,830	+		GFF6873	0.19	-0.4
4,830	+		GFF6873	0.19	-1.4
4,831	-		GFF6873	0.19	-0.5
4,831	-		GFF6873	0.19	+0.5
4,881	+		GFF6873	0.24	-0.1
4,881	+		GFF6873	0.24	+0.5
4,887	+		GFF6873	0.24	-0.5
4,887	+		GFF6873	0.24	+0.2
4,887	+		GFF6873	0.24	-0.2
4,887	+		GFF6873	0.24	-0.0
4,887	+		GFF6873	0.24	+0.4
4,887	+		GFF6873	0.24	+0.2
4,887	+		GFF6873	0.24	+0.4
4,887	+		GFF6873	0.24	+0.3
4,887	+		GFF6873	0.24	-0.5
4,887	+		GFF6873	0.24	-0.1
4,887	+		GFF6873	0.24	-1.0
4,887	+		GFF6873	0.24	-1.1
4,887	+		GFF6873	0.24	+0.2
4,888	-		GFF6873	0.24	+0.8
4,888	-		GFF6873	0.24	-0.0
4,888	-		GFF6873	0.24	-0.2
4,888	-		GFF6873	0.24	-0.7
4,888	-		GFF6873	0.24	-0.2
4,888	-		GFF6873	0.24	-1.9
4,888	-		GFF6873	0.24	-0.5
4,888	-		GFF6873	0.24	+0.2
4,888	-		GFF6873	0.24	+0.0
4,888	-		GFF6873	0.24	-0.4
4,888	-		GFF6873	0.24	-0.1
4,888	-		GFF6873	0.24	-0.7