Strain Fitness in Variovorax sp. SCN45 around GFF6775

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6774 and GFF6775 are separated by 37 nucleotidesGFF6775 and GFF6776 overlap by 4 nucleotidesGFF6776 and GFF6777 are separated by 23 nucleotides GFF6774 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 20,489 to 21,871 GFF6774 GFF6775 - ABC transporter, permease protein, at 21,909 to 22,799 GFF6775 GFF6776 - Maltodextrin ABC transporter, permease protein MdxG, at 22,796 to 23,647 GFF6776 GFF6777 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 23,671 to 24,741 GFF6777 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 20.909 kb on + strand, within GFF6774at 20.910 kb on - strand, within GFF6774at 20.910 kb on - strand, within GFF6774at 20.913 kb on - strand, within GFF6774at 20.913 kb on - strand, within GFF6774at 20.952 kb on - strand, within GFF6774at 21.017 kb on + strand, within GFF6774at 21.018 kb on - strand, within GFF6774at 21.018 kb on - strand, within GFF6774at 21.152 kb on + strand, within GFF6774at 21.152 kb on + strand, within GFF6774at 21.152 kb on + strand, within GFF6774at 21.153 kb on - strand, within GFF6774at 21.153 kb on - strand, within GFF6774at 21.153 kb on - strand, within GFF6774at 21.239 kb on + strand, within GFF6774at 21.251 kb on + strand, within GFF6774at 21.252 kb on - strand, within GFF6774at 21.435 kb on - strand, within GFF6774at 21.435 kb on - strand, within GFF6774at 21.495 kb on - strand, within GFF6774at 21.495 kb on - strand, within GFF6774at 21.600 kb on - strand, within GFF6774at 21.600 kb on - strand, within GFF6774at 21.692 kb on + strand, within GFF6774at 21.693 kb on - strand, within GFF6774at 21.740 kb on + strandat 21.741 kb on - strandat 22.056 kb on + strand, within GFF6775at 22.102 kb on - strand, within GFF6775at 22.102 kb on - strand, within GFF6775at 22.427 kb on + strand, within GFF6775at 22.427 kb on + strand, within GFF6775at 22.428 kb on - strand, within GFF6775at 22.428 kb on - strand, within GFF6775at 22.497 kb on + strand, within GFF6775at 22.497 kb on + strand, within GFF6775at 22.497 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.576 kb on - strand, within GFF6775at 22.632 kb on + strand, within GFF6775at 22.632 kb on + strand, within GFF6775at 22.632 kb on + strand, within GFF6775at 22.696 kb on - strand, within GFF6775at 22.756 kb on + strandat 22.757 kb on - strandat 22.771 kb on - strandat 22.771 kb on - strandat 22.771 kb on - strandat 22.771 kb on - strandat 22.822 kb on - strandat 22.886 kb on + strand, within GFF6776at 22.886 kb on + strand, within GFF6776at 22.887 kb on - strand, within GFF6776at 22.887 kb on - strand, within GFF6776at 23.000 kb on + strand, within GFF6776at 23.000 kb on + strand, within GFF6776at 23.001 kb on - strand, within GFF6776at 23.001 kb on - strand, within GFF6776at 23.157 kb on - strand, within GFF6776at 23.192 kb on + strand, within GFF6776at 23.192 kb on + strand, within GFF6776at 23.192 kb on + strand, within GFF6776at 23.193 kb on - strand, within GFF6776at 23.193 kb on - strand, within GFF6776at 23.193 kb on - strand, within GFF6776at 23.210 kb on + strand, within GFF6776at 23.210 kb on + strand, within GFF6776at 23.211 kb on - strand, within GFF6776at 23.375 kb on + strand, within GFF6776at 23.376 kb on - strand, within GFF6776at 23.417 kb on + strand, within GFF6776at 23.418 kb on - strand, within GFF6776at 23.444 kb on + strand, within GFF6776at 23.444 kb on + strand, within GFF6776at 23.444 kb on + strand, within GFF6776at 23.444 kb on + strand, within GFF6776at 23.444 kb on + strand, within GFF6776at 23.444 kb on + strand, within GFF6776at 23.445 kb on - strand, within GFF6776at 23.450 kb on + strand, within GFF6776at 23.450 kb on + strand, within GFF6776at 23.450 kb on + strand, within GFF6776at 23.450 kb on + strand, within GFF6776at 23.451 kb on - strand, within GFF6776at 23.451 kb on - strand, within GFF6776at 23.564 kb on + strandat 23.564 kb on + strandat 23.565 kb on - strandat 23.588 kb on + strandat 23.588 kb on + strandat 23.588 kb on + strandat 23.588 kb on + strandat 23.589 kb on - strandat 23.589 kb on - strandat 23.589 kb on - strandat 23.589 kb on - strandat 23.591 kb on + strandat 23.591 kb on + strandat 23.591 kb on + strandat 23.592 kb on - strandat 23.592 kb on - strandat 23.592 kb on - strandat 23.592 kb on - strandat 23.592 kb on - strandat 23.606 kb on + strandat 23.607 kb on - strandat 23.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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20,909 + GFF6774 0.30 -0.7
20,910 - GFF6774 0.30 -0.0
20,910 - GFF6774 0.30 -0.2
20,913 - GFF6774 0.31 +0.5
20,913 - GFF6774 0.31 -0.8
20,952 - GFF6774 0.33 +0.2
21,017 + GFF6774 0.38 -0.2
21,018 - GFF6774 0.38 +0.3
21,018 - GFF6774 0.38 +0.4
21,152 + GFF6774 0.48 -0.9
21,152 + GFF6774 0.48 -0.5
21,152 + GFF6774 0.48 +0.9
21,153 - GFF6774 0.48 +2.4
21,153 - GFF6774 0.48 +0.6
21,153 - GFF6774 0.48 +0.2
21,239 + GFF6774 0.54 -1.7
21,251 + GFF6774 0.55 -0.4
21,252 - GFF6774 0.55 -0.4
21,435 - GFF6774 0.68 -0.4
21,435 - GFF6774 0.68 +0.3
21,495 - GFF6774 0.73 +0.2
21,495 - GFF6774 0.73 +0.1
21,600 - GFF6774 0.80 -0.2
21,600 - GFF6774 0.80 +0.1
21,692 + GFF6774 0.87 +0.2
21,693 - GFF6774 0.87 -2.1
21,740 + +1.0
21,741 - +0.6
22,056 + GFF6775 0.16 -0.9
22,102 - GFF6775 0.22 +0.6
22,102 - GFF6775 0.22 -1.9
22,427 + GFF6775 0.58 -0.3
22,427 + GFF6775 0.58 -0.1
22,428 - GFF6775 0.58 +1.1
22,428 - GFF6775 0.58 -1.1
22,497 + GFF6775 0.66 -1.1
22,497 + GFF6775 0.66 -0.3
22,497 + GFF6775 0.66 -0.1
22,575 + GFF6775 0.75 -1.0
22,575 + GFF6775 0.75 -1.5
22,575 + GFF6775 0.75 -0.6
22,575 + GFF6775 0.75 -2.4
22,576 - GFF6775 0.75 -1.4
22,632 + GFF6775 0.81 +0.1
22,632 + GFF6775 0.81 -1.1
22,632 + GFF6775 0.81 -1.7
22,696 - GFF6775 0.88 -0.5
22,756 + -0.3
22,757 - -0.3
22,771 - +0.9
22,771 - +0.0
22,771 - +0.1
22,771 - -0.5
22,822 - -0.3
22,886 + GFF6776 0.11 +1.8
22,886 + GFF6776 0.11 -2.1
22,887 - GFF6776 0.11 +0.1
22,887 - GFF6776 0.11 +0.6
23,000 + GFF6776 0.24 -0.0
23,000 + GFF6776 0.24 +0.2
23,001 - GFF6776 0.24 -0.9
23,001 - GFF6776 0.24 -0.7
23,157 - GFF6776 0.42 +0.6
23,192 + GFF6776 0.46 -0.5
23,192 + GFF6776 0.46 -1.1
23,192 + GFF6776 0.46 -1.0
23,193 - GFF6776 0.47 -0.8
23,193 - GFF6776 0.47 -0.7
23,193 - GFF6776 0.47 +0.4
23,210 + GFF6776 0.49 +0.3
23,210 + GFF6776 0.49 -0.1
23,211 - GFF6776 0.49 -1.9
23,375 + GFF6776 0.68 +0.1
23,376 - GFF6776 0.68 -0.6
23,417 + GFF6776 0.73 -0.6
23,418 - GFF6776 0.73 +0.0
23,444 + GFF6776 0.76 -0.1
23,444 + GFF6776 0.76 -0.7
23,444 + GFF6776 0.76 -1.0
23,444 + GFF6776 0.76 +1.4
23,444 + GFF6776 0.76 -0.3
23,444 + GFF6776 0.76 -0.7
23,445 - GFF6776 0.76 -0.8
23,450 + GFF6776 0.77 -0.2
23,450 + GFF6776 0.77 -0.1
23,450 + GFF6776 0.77 -0.6
23,450 + GFF6776 0.77 -0.8
23,451 - GFF6776 0.77 -1.1
23,451 - GFF6776 0.77 +0.6
23,564 + -1.3
23,564 + +0.4
23,565 - +0.2
23,588 + +0.1
23,588 + -0.1
23,588 + +0.1
23,588 + +0.3
23,589 - +0.0
23,589 - -0.5
23,589 - +0.1
23,589 - -1.6
23,591 + +0.8
23,591 + +0.3
23,591 + -0.6
23,592 - -0.5
23,592 - +0.4
23,592 - +0.1
23,592 - -0.1
23,592 - +0.3
23,606 + -2.0
23,607 - +2.4
23,607 - -0.1

Or see this region's nucleotide sequence