Strain Fitness in Variovorax sp. SCN45 around GFF6621

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6620 and GFF6621 are separated by 425 nucleotidesGFF6621 and GFF6622 are separated by 2 nucleotides GFF6620 - no description, at 64,206 to 65,174 GFF6620 GFF6621 - Mobile element protein, at 65,600 to 67,132 GFF6621 GFF6622 - Mobile element protein, at 67,135 to 67,887 GFF6622 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.615 kb on - strand, within GFF6620at 64.741 kb on + strand, within GFF6620at 64.741 kb on + strand, within GFF6620at 64.957 kb on + strand, within GFF6620at 64.995 kb on + strand, within GFF6620at 64.996 kb on - strand, within GFF6620at 64.996 kb on - strand, within GFF6620at 64.996 kb on - strand, within GFF6620at 65.004 kb on + strand, within GFF6620at 65.004 kb on + strand, within GFF6620at 65.101 kb on + strandat 65.102 kb on - strandat 65.164 kb on + strandat 65.164 kb on + strandat 65.165 kb on - strandat 65.189 kb on + strandat 65.189 kb on + strandat 65.190 kb on - strandat 65.197 kb on + strandat 65.198 kb on - strandat 65.220 kb on + strandat 65.221 kb on - strandat 65.221 kb on - strandat 65.221 kb on - strandat 65.336 kb on + strandat 65.337 kb on - strandat 65.376 kb on + strandat 65.377 kb on - strandat 65.377 kb on - strandat 65.377 kb on - strandat 65.377 kb on - strandat 65.377 kb on - strandat 65.415 kb on - strandat 65.493 kb on + strandat 65.493 kb on + strandat 65.494 kb on - strandat 65.494 kb on - strandat 65.494 kb on - strandat 65.507 kb on - strandat 65.593 kb on + strandat 65.593 kb on + strandat 65.593 kb on + strandat 65.593 kb on + strandat 65.593 kb on + strandat 65.594 kb on - strandat 65.594 kb on - strandat 65.648 kb on + strandat 65.648 kb on + strandat 65.648 kb on + strandat 65.648 kb on + strandat 65.648 kb on + strandat 65.649 kb on - strandat 65.649 kb on - strandat 65.649 kb on - strandat 65.649 kb on - strandat 65.936 kb on + strand, within GFF6621at 65.936 kb on + strand, within GFF6621at 65.937 kb on - strand, within GFF6621at 65.937 kb on - strand, within GFF6621at 65.937 kb on - strand, within GFF6621at 65.937 kb on - strand, within GFF6621at 65.985 kb on + strand, within GFF6621at 65.985 kb on + strand, within GFF6621at 65.985 kb on + strand, within GFF6621at 65.985 kb on + strand, within GFF6621at 65.986 kb on - strand, within GFF6621at 65.986 kb on - strand, within GFF6621at 65.986 kb on - strand, within GFF6621at 66.122 kb on + strand, within GFF6621at 66.122 kb on + strand, within GFF6621at 66.122 kb on + strand, within GFF6621at 66.122 kb on + strand, within GFF6621at 66.123 kb on - strand, within GFF6621at 66.123 kb on - strand, within GFF6621at 66.123 kb on - strand, within GFF6621at 66.123 kb on - strand, within GFF6621at 66.287 kb on + strand, within GFF6621at 66.287 kb on + strand, within GFF6621at 66.397 kb on - strand, within GFF6621at 66.397 kb on - strand, within GFF6621at 66.591 kb on - strand, within GFF6621at 66.621 kb on + strand, within GFF6621at 66.621 kb on + strand, within GFF6621at 66.621 kb on + strand, within GFF6621at 66.622 kb on - strand, within GFF6621at 66.622 kb on - strand, within GFF6621at 66.622 kb on - strand, within GFF6621at 66.793 kb on - strand, within GFF6621at 66.881 kb on + strand, within GFF6621at 66.882 kb on - strand, within GFF6621at 67.118 kb on + strandat 67.119 kb on - strandat 67.119 kb on - strandat 67.119 kb on - strandat 67.130 kb on + strandat 67.130 kb on + strandat 67.131 kb on - strandat 67.147 kb on - strandat 67.201 kb on + strandat 67.201 kb on + strandat 67.357 kb on + strand, within GFF6622at 67.357 kb on + strand, within GFF6622at 67.357 kb on + strand, within GFF6622at 67.358 kb on - strand, within GFF6622at 67.534 kb on + strand, within GFF6622at 67.534 kb on + strand, within GFF6622at 67.534 kb on + strand, within GFF6622at 67.534 kb on + strand, within GFF6622at 67.535 kb on - strand, within GFF6622at 67.535 kb on - strand, within GFF6622at 67.535 kb on - strand, within GFF6622at 67.535 kb on - strand, within GFF6622at 67.612 kb on + strand, within GFF6622at 67.612 kb on + strand, within GFF6622at 67.613 kb on - strand, within GFF6622at 67.629 kb on - strand, within GFF6622at 67.912 kb on - strandat 67.912 kb on - strandat 67.912 kb on - strandat 67.937 kb on + strandat 67.938 kb on - strandat 67.992 kb on + strandat 67.998 kb on + strandat 67.998 kb on + strandat 67.998 kb on + strandat 67.998 kb on + strandat 67.999 kb on - strandat 67.999 kb on - strandat 68.092 kb on + strandat 68.093 kb on - strandat 68.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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64,615 - GFF6620 0.42 -0.9
64,741 + GFF6620 0.55 +0.9
64,741 + GFF6620 0.55 +0.1
64,957 + GFF6620 0.78 -0.1
64,995 + GFF6620 0.81 +0.9
64,996 - GFF6620 0.82 +0.2
64,996 - GFF6620 0.82 -0.1
64,996 - GFF6620 0.82 +0.2
65,004 + GFF6620 0.82 -1.1
65,004 + GFF6620 0.82 -0.3
65,101 + -0.5
65,102 - -2.9
65,164 + -0.1
65,164 + +0.5
65,165 - -1.1
65,189 + +1.2
65,189 + -0.1
65,190 - -0.5
65,197 + -0.4
65,198 - -0.3
65,220 + +0.1
65,221 - +0.2
65,221 - +0.2
65,221 - +0.5
65,336 + +0.0
65,337 - -0.8
65,376 + -0.3
65,377 - -0.2
65,377 - -1.3
65,377 - -1.1
65,377 - -0.7
65,377 - +0.5
65,415 - -1.1
65,493 + -1.2
65,493 + -0.3
65,494 - -1.6
65,494 - -0.5
65,494 - -0.1
65,507 - -0.5
65,593 + -1.7
65,593 + -0.0
65,593 + -0.3
65,593 + +0.5
65,593 + -0.4
65,594 - +0.0
65,594 - +0.3
65,648 + -1.5
65,648 + -0.2
65,648 + -0.2
65,648 + -0.5
65,648 + +0.0
65,649 - -2.1
65,649 - -2.2
65,649 - +1.0
65,649 - +0.9
65,936 + GFF6621 0.22 +1.9
65,936 + GFF6621 0.22 +0.3
65,937 - GFF6621 0.22 +0.2
65,937 - GFF6621 0.22 -0.2
65,937 - GFF6621 0.22 -1.4
65,937 - GFF6621 0.22 +1.5
65,985 + GFF6621 0.25 +0.5
65,985 + GFF6621 0.25 -0.4
65,985 + GFF6621 0.25 -1.0
65,985 + GFF6621 0.25 -1.1
65,986 - GFF6621 0.25 -0.7
65,986 - GFF6621 0.25 +1.0
65,986 - GFF6621 0.25 -0.2
66,122 + GFF6621 0.34 +0.4
66,122 + GFF6621 0.34 +0.8
66,122 + GFF6621 0.34 -1.0
66,122 + GFF6621 0.34 -0.8
66,123 - GFF6621 0.34 -2.6
66,123 - GFF6621 0.34 -0.9
66,123 - GFF6621 0.34 +1.0
66,123 - GFF6621 0.34 -0.3
66,287 + GFF6621 0.45 -0.4
66,287 + GFF6621 0.45 -0.3
66,397 - GFF6621 0.52 -0.5
66,397 - GFF6621 0.52 -0.9
66,591 - GFF6621 0.65 +0.3
66,621 + GFF6621 0.67 -0.4
66,621 + GFF6621 0.67 -1.1
66,621 + GFF6621 0.67 -0.2
66,622 - GFF6621 0.67 -0.1
66,622 - GFF6621 0.67 +0.9
66,622 - GFF6621 0.67 +1.0
66,793 - GFF6621 0.78 -0.2
66,881 + GFF6621 0.84 -0.5
66,882 - GFF6621 0.84 -0.1
67,118 + -2.1
67,119 - -0.5
67,119 - -1.7
67,119 - +0.7
67,130 + -1.0
67,130 + -0.2
67,131 - +0.7
67,147 - +0.4
67,201 + -0.4
67,201 + -0.3
67,357 + GFF6622 0.29 -0.1
67,357 + GFF6622 0.29 -1.1
67,357 + GFF6622 0.29 +0.5
67,358 - GFF6622 0.30 -0.8
67,534 + GFF6622 0.53 -0.3
67,534 + GFF6622 0.53 -0.2
67,534 + GFF6622 0.53 -0.8
67,534 + GFF6622 0.53 +0.2
67,535 - GFF6622 0.53 +0.3
67,535 - GFF6622 0.53 -1.2
67,535 - GFF6622 0.53 +0.1
67,535 - GFF6622 0.53 -0.5
67,612 + GFF6622 0.63 -1.0
67,612 + GFF6622 0.63 -0.3
67,613 - GFF6622 0.63 -1.3
67,629 - GFF6622 0.66 +0.3
67,912 - +0.0
67,912 - -2.5
67,912 - -2.1
67,937 + -0.4
67,938 - +0.0
67,992 + -0.8
67,998 + +0.3
67,998 + -0.5
67,998 + +0.5
67,998 + -0.1
67,999 - +0.2
67,999 - +0.2
68,092 + +1.4
68,093 - +0.8
68,093 - -0.1

Or see this region's nucleotide sequence