Strain Fitness in Variovorax sp. SCN45 around GFF6591

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6590 and GFF6591 are separated by 45 nucleotidesGFF6591 and GFF6592 are separated by 58 nucleotidesGFF6592 and GFF6593 overlap by 11 nucleotides GFF6590 - Niacin transporter NiaP, at 33,439 to 34,755 GFF6590 GFF6591 - Transcriptional regulator, GntR family, at 34,801 to 35,547 GFF6591 GFF6592 - hypothetical protein, at 35,606 to 36,322 GFF6592 GFF6593 - Alcohol dehydrogenase (EC 1.1.1.1), at 36,312 to 37,580 GFF6593 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.832 kb on + strand, within GFF6590at 33.832 kb on + strand, within GFF6590at 33.832 kb on + strand, within GFF6590at 33.833 kb on - strand, within GFF6590at 33.833 kb on - strand, within GFF6590at 33.833 kb on - strand, within GFF6590at 33.893 kb on - strand, within GFF6590at 33.959 kb on + strand, within GFF6590at 33.959 kb on + strand, within GFF6590at 33.959 kb on + strand, within GFF6590at 33.959 kb on + strand, within GFF6590at 33.960 kb on - strand, within GFF6590at 33.960 kb on - strand, within GFF6590at 34.223 kb on - strand, within GFF6590at 34.225 kb on + strand, within GFF6590at 34.225 kb on + strand, within GFF6590at 34.270 kb on + strand, within GFF6590at 34.270 kb on + strand, within GFF6590at 34.294 kb on + strand, within GFF6590at 34.294 kb on + strand, within GFF6590at 34.294 kb on + strand, within GFF6590at 34.296 kb on + strand, within GFF6590at 34.297 kb on - strand, within GFF6590at 34.297 kb on - strand, within GFF6590at 34.303 kb on + strand, within GFF6590at 34.304 kb on - strand, within GFF6590at 34.414 kb on + strand, within GFF6590at 34.414 kb on + strand, within GFF6590at 34.414 kb on + strand, within GFF6590at 34.414 kb on + strand, within GFF6590at 34.414 kb on + strand, within GFF6590at 34.414 kb on + strand, within GFF6590at 34.414 kb on + strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.415 kb on - strand, within GFF6590at 34.420 kb on + strand, within GFF6590at 34.420 kb on + strand, within GFF6590at 34.421 kb on - strand, within GFF6590at 34.421 kb on - strand, within GFF6590at 34.421 kb on - strand, within GFF6590at 34.421 kb on - strand, within GFF6590at 34.522 kb on + strand, within GFF6590at 34.522 kb on + strand, within GFF6590at 34.522 kb on + strand, within GFF6590at 34.523 kb on - strand, within GFF6590at 34.537 kb on + strand, within GFF6590at 34.602 kb on + strand, within GFF6590at 34.603 kb on - strand, within GFF6590at 34.603 kb on - strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.612 kb on + strand, within GFF6590at 34.613 kb on - strand, within GFF6590at 34.613 kb on - strand, within GFF6590at 34.613 kb on - strand, within GFF6590at 34.802 kb on + strandat 34.832 kb on + strandat 34.833 kb on - strandat 34.959 kb on - strand, within GFF6591at 34.967 kb on + strand, within GFF6591at 34.968 kb on - strand, within GFF6591at 35.230 kb on + strand, within GFF6591at 35.230 kb on + strand, within GFF6591at 35.231 kb on - strand, within GFF6591at 35.231 kb on - strand, within GFF6591at 35.231 kb on - strand, within GFF6591at 35.382 kb on + strand, within GFF6591at 35.554 kb on + strandat 35.585 kb on + strandat 35.585 kb on + strandat 35.591 kb on - strandat 35.593 kb on + strandat 35.593 kb on + strandat 35.594 kb on - strandat 35.615 kb on - strandat 35.615 kb on - strandat 35.780 kb on + strand, within GFF6592at 35.796 kb on - strand, within GFF6592at 35.796 kb on - strand, within GFF6592at 35.891 kb on + strand, within GFF6592at 35.891 kb on + strand, within GFF6592at 35.891 kb on + strand, within GFF6592at 36.289 kb on - strandat 36.309 kb on - strandat 36.474 kb on + strand, within GFF6593

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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33,832 + GFF6590 0.30 -0.2
33,832 + GFF6590 0.30 +0.0
33,832 + GFF6590 0.30 -0.7
33,833 - GFF6590 0.30 +0.3
33,833 - GFF6590 0.30 -0.7
33,833 - GFF6590 0.30 +0.4
33,893 - GFF6590 0.34 -0.4
33,959 + GFF6590 0.39 -0.5
33,959 + GFF6590 0.39 -0.1
33,959 + GFF6590 0.39 -1.1
33,959 + GFF6590 0.39 +0.1
33,960 - GFF6590 0.40 -0.4
33,960 - GFF6590 0.40 +0.5
34,223 - GFF6590 0.60 +0.1
34,225 + GFF6590 0.60 -0.7
34,225 + GFF6590 0.60 +0.4
34,270 + GFF6590 0.63 +0.3
34,270 + GFF6590 0.63 -0.6
34,294 + GFF6590 0.65 -0.3
34,294 + GFF6590 0.65 -1.7
34,294 + GFF6590 0.65 -0.3
34,296 + GFF6590 0.65 -1.4
34,297 - GFF6590 0.65 -0.9
34,297 - GFF6590 0.65 +0.7
34,303 + GFF6590 0.66 +0.9
34,304 - GFF6590 0.66 -0.2
34,414 + GFF6590 0.74 +0.1
34,414 + GFF6590 0.74 -0.6
34,414 + GFF6590 0.74 +0.8
34,414 + GFF6590 0.74 +0.9
34,414 + GFF6590 0.74 +1.5
34,414 + GFF6590 0.74 -0.4
34,414 + GFF6590 0.74 +0.5
34,415 - GFF6590 0.74 -0.1
34,415 - GFF6590 0.74 +0.9
34,415 - GFF6590 0.74 +0.0
34,415 - GFF6590 0.74 -1.4
34,415 - GFF6590 0.74 +0.5
34,415 - GFF6590 0.74 -0.3
34,415 - GFF6590 0.74 -0.5
34,415 - GFF6590 0.74 +0.3
34,415 - GFF6590 0.74 +0.6
34,415 - GFF6590 0.74 -0.2
34,420 + GFF6590 0.74 -0.1
34,420 + GFF6590 0.74 +0.2
34,421 - GFF6590 0.75 -1.2
34,421 - GFF6590 0.75 +0.2
34,421 - GFF6590 0.75 -0.0
34,421 - GFF6590 0.75 -0.7
34,522 + GFF6590 0.82 -1.1
34,522 + GFF6590 0.82 +1.5
34,522 + GFF6590 0.82 -2.0
34,523 - GFF6590 0.82 -0.3
34,537 + GFF6590 0.83 -0.3
34,602 + GFF6590 0.88 -1.3
34,603 - GFF6590 0.88 +1.0
34,603 - GFF6590 0.88 -0.7
34,612 + GFF6590 0.89 -0.3
34,612 + GFF6590 0.89 -0.3
34,612 + GFF6590 0.89 -0.8
34,612 + GFF6590 0.89 +1.8
34,612 + GFF6590 0.89 -0.1
34,613 - GFF6590 0.89 -1.2
34,613 - GFF6590 0.89 -0.5
34,613 - GFF6590 0.89 +0.6
34,802 + -0.7
34,832 + +0.3
34,833 - -1.4
34,959 - GFF6591 0.21 -0.5
34,967 + GFF6591 0.22 -1.2
34,968 - GFF6591 0.22 -0.7
35,230 + GFF6591 0.57 -2.9
35,230 + GFF6591 0.57 -1.1
35,231 - GFF6591 0.58 -1.7
35,231 - GFF6591 0.58 -2.4
35,231 - GFF6591 0.58 -3.1
35,382 + GFF6591 0.78 -1.3
35,554 + +1.1
35,585 + -0.3
35,585 + -0.8
35,591 - -0.8
35,593 + -0.2
35,593 + -0.7
35,594 - -0.4
35,615 - -0.4
35,615 - -0.2
35,780 + GFF6592 0.24 +1.1
35,796 - GFF6592 0.26 -2.0
35,796 - GFF6592 0.26 -0.2
35,891 + GFF6592 0.40 +1.0
35,891 + GFF6592 0.40 +0.9
35,891 + GFF6592 0.40 -0.1
36,289 - +0.1
36,309 - -1.1
36,474 + GFF6593 0.13 +1.1

Or see this region's nucleotide sequence