Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6515 and GFF6516 are separated by 79 nucleotides GFF6516 and GFF6517 are separated by 135 nucleotides GFF6517 and GFF6518 overlap by 4 nucleotides
GFF6515 - no description, at 11,529 to 12,515
GFF6515
GFF6516 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 12,595 to 13,152
GFF6516
GFF6517 - Cation transport protein ChaC, at 13,288 to 13,977
GFF6517
GFF6518 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 13,974 to 14,510
GFF6518
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.829 kb on + strand, within GFF6515 at 11.829 kb on + strand, within GFF6515 at 11.829 kb on + strand, within GFF6515 at 11.829 kb on + strand, within GFF6515 at 11.830 kb on - strand, within GFF6515 at 12.305 kb on + strand, within GFF6515 at 12.306 kb on - strand, within GFF6515 at 12.306 kb on - strand, within GFF6515 at 12.387 kb on + strand, within GFF6515 at 12.388 kb on - strand, within GFF6515 at 12.388 kb on - strand, within GFF6515 at 12.421 kb on + strand at 12.421 kb on + strand at 12.421 kb on + strand at 12.421 kb on + strand at 12.422 kb on - strand at 12.422 kb on - strand at 12.422 kb on - strand at 12.513 kb on + strand at 12.513 kb on + strand at 12.884 kb on + strand, within GFF6516 at 12.884 kb on + strand, within GFF6516 at 12.884 kb on + strand, within GFF6516 at 12.885 kb on - strand, within GFF6516 at 12.885 kb on - strand, within GFF6516 at 12.885 kb on - strand, within GFF6516 at 13.169 kb on + strand at 13.184 kb on + strand at 13.185 kb on - strand at 13.185 kb on - strand at 13.185 kb on - strand at 13.185 kb on - strand at 13.188 kb on + strand at 13.188 kb on + strand at 13.188 kb on + strand at 13.189 kb on - strand at 13.189 kb on - strand at 13.220 kb on + strand at 13.220 kb on + strand at 13.572 kb on - strand, within GFF6517 at 13.618 kb on + strand, within GFF6517 at 13.618 kb on + strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.737 kb on + strand, within GFF6517 at 13.738 kb on - strand, within GFF6517 at 13.738 kb on - strand, within GFF6517 at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 11,829 + GFF6515 0.30 -0.2 11,829 + GFF6515 0.30 -0.1 11,829 + GFF6515 0.30 -1.7 11,829 + GFF6515 0.30 +1.2 11,830 - GFF6515 0.30 +0.0 12,305 + GFF6515 0.79 +0.9 12,306 - GFF6515 0.79 -0.9 12,306 - GFF6515 0.79 +0.6 12,387 + GFF6515 0.87 -0.6 12,388 - GFF6515 0.87 -2.7 12,388 - GFF6515 0.87 -0.3 12,421 + +0.9 12,421 + -0.8 12,421 + -0.9 12,421 + +0.0 12,422 - -0.1 12,422 - +0.3 12,422 - +1.5 12,513 + -1.1 12,513 + -0.1 12,884 + GFF6516 0.52 -0.5 12,884 + GFF6516 0.52 -0.6 12,884 + GFF6516 0.52 -1.3 12,885 - GFF6516 0.52 -1.6 12,885 - GFF6516 0.52 -0.7 12,885 - GFF6516 0.52 -1.0 13,169 + +0.9 13,184 + +0.9 13,185 - +0.0 13,185 - +0.4 13,185 - -0.1 13,185 - -0.2 13,188 + +0.3 13,188 + +0.3 13,188 + -0.8 13,189 - -1.4 13,189 - +0.1 13,220 + -0.6 13,220 + -0.6 13,572 - GFF6517 0.41 +0.2 13,618 + GFF6517 0.48 +1.1 13,618 + GFF6517 0.48 -0.1 13,619 - GFF6517 0.48 -0.5 13,619 - GFF6517 0.48 -1.4 13,619 - GFF6517 0.48 -0.7 13,619 - GFF6517 0.48 -0.2 13,735 + GFF6517 0.65 -1.7 13,735 + GFF6517 0.65 -0.0 13,735 + GFF6517 0.65 +0.3 13,735 + GFF6517 0.65 -1.1 13,735 + GFF6517 0.65 +0.0 13,735 + GFF6517 0.65 +1.5 13,735 + GFF6517 0.65 +0.1 13,735 + GFF6517 0.65 -1.1 13,735 + GFF6517 0.65 -0.1 13,735 + GFF6517 0.65 +0.5 13,735 + GFF6517 0.65 -0.1 13,735 + GFF6517 0.65 -0.8 13,735 + GFF6517 0.65 -1.7 13,736 - GFF6517 0.65 -0.3 13,736 - GFF6517 0.65 +0.9 13,736 - GFF6517 0.65 -0.5 13,736 - GFF6517 0.65 -1.4 13,736 - GFF6517 0.65 -0.2 13,736 - GFF6517 0.65 -0.1 13,737 + GFF6517 0.65 -1.0 13,738 - GFF6517 0.65 -0.5 13,738 - GFF6517 0.65 +0.5 13,910 + +0.2 13,910 + +0.0 13,910 + -0.3 13,910 + -0.1 13,910 + -0.8 13,910 + -0.3 13,910 + +1.2 13,911 - +0.6 13,911 - -0.1 13,911 - +0.4 13,911 - +0.1 13,911 - +1.5 13,911 - -0.3 13,911 - +0.3 13,912 + -0.9 13,912 + -0.9 13,912 + -0.1 13,912 + -0.2 13,912 + -0.8 13,912 + +0.2 13,912 + +1.3 13,912 + -0.1 13,912 + -0.6 13,912 + -0.7 13,912 + -1.3 13,912 + -0.7 13,912 + +0.5 13,913 - +1.8 13,913 - -0.3 13,913 - -0.0 13,913 - -0.0 13,913 - +0.4 13,913 - -0.5
Or see this region's nucleotide sequence