Strain Fitness in Variovorax sp. SCN45 around GFF6433

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
5,159	+		GFF6431	0.68	-1.0
5,336	+				+0.0
5,530	+		GFF6432	0.17	-1.4
5,531	-		GFF6432	0.18	+0.3
6,284	+				-0.4
6,285	-				+0.6
6,662	+		GFF6433	0.10	-1.2
6,663	-		GFF6433	0.10	-0.2
6,728	+		GFF6433	0.11	-1.0
6,728	+		GFF6433	0.11	+0.6
6,728	+		GFF6433	0.11	-0.6
6,728	+		GFF6433	0.11	-0.4
6,729	-		GFF6433	0.11	-0.0
6,815	+		GFF6433	0.13	+1.6
6,815	+		GFF6433	0.13	-0.1
6,944	+		GFF6433	0.15	-0.9
6,995	+		GFF6433	0.16	+1.7
6,995	+		GFF6433	0.16	-0.5
6,996	-		GFF6433	0.16	+0.6
7,055	+		GFF6433	0.18	-0.8
7,055	+		GFF6433	0.18	-0.3
7,103	+		GFF6433	0.18	-0.8
7,103	+		GFF6433	0.18	-1.3
7,103	+		GFF6433	0.18	+0.8
7,103	+		GFF6433	0.18	+0.8
7,104	-		GFF6433	0.18	-0.0
7,104	-		GFF6433	0.18	-1.4
7,104	-		GFF6433	0.18	+0.5
7,212	-		GFF6433	0.20	-0.3
7,373	+		GFF6433	0.24	-0.4
7,374	-		GFF6433	0.24	-0.0
7,502	+		GFF6433	0.26	+0.6
7,502	+		GFF6433	0.26	+0.2
7,844	+		GFF6433	0.32	+0.9
7,844	+		GFF6433	0.32	-0.4
7,845	-		GFF6433	0.33	+0.7
7,845	-		GFF6433	0.33	+1.1
8,030	+		GFF6433	0.36	+0.1
8,031	-		GFF6433	0.36	-0.8
8,031	-		GFF6433	0.36	-0.1
8,031	-		GFF6433	0.36	+2.8
8,031	-		GFF6433	0.36	-0.8
8,283	-		GFF6433	0.41	-0.0
8,921	+		GFF6433	0.53	-0.5
8,921	+		GFF6433	0.53	+0.9
8,921	+		GFF6433	0.53	-0.4
8,922	-		GFF6433	0.53	-0.2
9,066	-		GFF6433	0.56	-0.0
9,066	-		GFF6433	0.56	-0.2
9,323	+		GFF6433	0.61	+2.1
9,323	+		GFF6433	0.61	-0.4
9,324	-		GFF6433	0.61	-0.0
9,324	-		GFF6433	0.61	-0.2
9,623	+		GFF6433	0.66	-0.2
9,692	+		GFF6433	0.68	-0.2
9,792	+		GFF6433	0.69	+2.0
9,792	+		GFF6433	0.69	-0.5
9,893	+		GFF6433	0.71	-1.4
9,893	+		GFF6433	0.71	+0.1
9,893	+		GFF6433	0.71	-2.6
9,894	-		GFF6433	0.71	-0.0
9,894	-		GFF6433	0.71	-0.2
9,935	+		GFF6433	0.72	-2.8
9,935	+		GFF6433	0.72	-0.3
9,936	-		GFF6433	0.72	-1.7
10,220	+		GFF6433	0.78	+0.4
10,220	+		GFF6433	0.78	+0.9
10,220	+		GFF6433	0.78	+1.8
10,220	+		GFF6433	0.78	-0.0
10,257	-		GFF6433	0.78	+0.1
10,265	+		GFF6433	0.78	-0.2
10,265	+		GFF6433	0.78	+0.2
10,265	+		GFF6433	0.78	-0.1
10,266	-		GFF6433	0.78	-0.0
10,266	-		GFF6433	0.78	-0.2
10,266	-		GFF6433	0.78	-0.2
10,266	-		GFF6433	0.78	-0.0
10,370	+		GFF6433	0.80	+0.8
10,370	+		GFF6433	0.80	+1.0
10,371	-		GFF6433	0.80	+0.1
10,371	-		GFF6433	0.80	+0.2
10,374	-		GFF6433	0.81	-0.0
10,478	+		GFF6433	0.83	+0.2
10,595	+		GFF6433	0.85	-0.3
10,595	+		GFF6433	0.85	+0.4
10,596	-		GFF6433	0.85	-1.1
10,596	-		GFF6433	0.85	+0.4
10,596	-		GFF6433	0.85	+0.1
10,596	-		GFF6433	0.85	-1.4
10,627	+		GFF6433	0.85	-0.4
10,788	+		GFF6433	0.88	-1.0
10,789	-		GFF6433	0.88	-1.3
10,790	+		GFF6433	0.88	+0.0
10,791	-		GFF6433	0.88	-0.0
10,791	-		GFF6433	0.88	-0.3
10,791	-		GFF6433	0.88	+0.6
10,920	-				+0.2
10,922	+				-0.6
10,923	-				-1.5
10,923	-				+0.9
10,923	-				+0.2
10,928	+				-0.8
10,928	+				+0.6
10,928	+				+0.6
10,928	+				-0.2
10,928	+				-0.2
10,929	-				-2.3
10,929	-				+0.9
10,929	-				-0.3
10,929	-				-0.2
10,929	-				-0.4
10,929	-				-1.2
11,100	-				-0.5
11,100	-				+0.7
11,100	-				+0.2
11,179	+				-1.9
11,179	+				-0.0
11,397	+				-1.0
11,397	+				-1.7
11,397	+				-0.2
11,397	+				-2.0
11,397	+				-0.0
11,398	-				-0.9
11,561	+				-0.3