Strain Fitness in Variovorax sp. SCN45 around GFF6377

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
48,133	+		GFF6375	0.87	+0.5
48,133	+		GFF6375	0.87	-0.7
48,134	-		GFF6375	0.87	+0.8
49,136	-				-0.5
49,136	-				-0.8
49,136	-				+1.4
49,136	-				-0.4
49,136	-				-1.3
49,184	-				-0.6
49,306	+		GFF6377	0.17	+0.5
49,306	+		GFF6377	0.17	+0.6
49,307	-		GFF6377	0.17	-0.6
49,307	-		GFF6377	0.17	+0.4
49,325	-		GFF6377	0.19	-1.1
49,366	+		GFF6377	0.22	+0.1
49,366	+		GFF6377	0.22	-0.7
49,496	-		GFF6377	0.34	-0.7
49,496	-		GFF6377	0.34	-0.8
49,545	+		GFF6377	0.38	-0.5
49,546	-		GFF6377	0.38	-0.4
49,669	+		GFF6377	0.48	-1.1
49,670	-		GFF6377	0.48	-0.1
49,729	+		GFF6377	0.54	-0.7
50,006	-		GFF6377	0.77	-0.2
50,077	+		GFF6377	0.84	-0.9
50,078	-		GFF6377	0.84	-1.1
50,290	+				-0.7
50,290	+				-0.5
50,291	-				+0.3
50,595	-		GFF6378	0.38	-0.1
50,724	-		GFF6378	0.56	-0.1
51,060	+				-0.5
51,208	+				+0.4