Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6135 and GFF6136 are separated by 220 nucleotides GFF6136 and GFF6137 are separated by 70 nucleotides
GFF6135 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 36,127 to 37,281
GFF6135
GFF6136 - TRAP transporter solute receptor, unknown substrate 6, at 37,502 to 38,584
GFF6136
GFF6137 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 38,655 to 40,493
GFF6137
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 36.744 kb on - strand, within GFF6135 at 36.872 kb on + strand, within GFF6135 at 36.872 kb on + strand, within GFF6135 at 36.872 kb on + strand, within GFF6135 at 36.873 kb on - strand, within GFF6135 at 36.873 kb on - strand, within GFF6135 at 36.873 kb on - strand, within GFF6135 at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.306 kb on + strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.307 kb on - strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.310 kb on + strand at 37.311 kb on - strand at 37.321 kb on - strand at 37.329 kb on - strand at 37.329 kb on - strand at 37.339 kb on + strand at 37.340 kb on - strand at 37.388 kb on - strand at 37.407 kb on + strand at 37.407 kb on + strand at 37.407 kb on + strand at 37.408 kb on - strand at 37.419 kb on + strand at 37.420 kb on - strand at 37.435 kb on + strand at 37.435 kb on + strand at 37.436 kb on - strand at 37.436 kb on - strand at 37.436 kb on - strand at 37.436 kb on - strand at 37.437 kb on + strand at 37.438 kb on - strand at 37.438 kb on - strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.498 kb on - strand at 37.790 kb on + strand, within GFF6136 at 37.791 kb on - strand, within GFF6136 at 37.791 kb on - strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.793 kb on + strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.794 kb on - strand, within GFF6136 at 37.880 kb on + strand, within GFF6136 at 37.881 kb on - strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.922 kb on + strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.923 kb on - strand, within GFF6136 at 37.977 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.103 kb on - strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.192 kb on + strand, within GFF6136 at 38.193 kb on - strand, within GFF6136 at 38.193 kb on - strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.195 kb on + strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.196 kb on - strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.198 kb on + strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.199 kb on - strand, within GFF6136 at 38.201 kb on + strand, within GFF6136 at 38.202 kb on - strand, within GFF6136 at 38.337 kb on - strand, within GFF6136 at 38.337 kb on - strand, within GFF6136 at 38.337 kb on - strand, within GFF6136 at 38.345 kb on + strand, within GFF6136 at 38.345 kb on + strand, within GFF6136 at 38.346 kb on - strand, within GFF6136 at 38.346 kb on - strand, within GFF6136 at 38.346 kb on - strand, within GFF6136 at 38.346 kb on - strand, within GFF6136 at 38.346 kb on - strand, within GFF6136 at 38.346 kb on - strand, within GFF6136 at 38.561 kb on + strand at 38.561 kb on + strand at 38.561 kb on + strand at 38.562 kb on - strand at 38.562 kb on - strand at 38.562 kb on - strand at 38.562 kb on - strand at 38.562 kb on - strand at 38.562 kb on - strand at 38.562 kb on - strand at 38.992 kb on + strand, within GFF6137 at 38.992 kb on + strand, within GFF6137 at 38.993 kb on - strand, within GFF6137 at 39.046 kb on + strand, within GFF6137 at 39.046 kb on + strand, within GFF6137 at 39.046 kb on + strand, within GFF6137 at 39.046 kb on + strand, within GFF6137 at 39.046 kb on + strand, within GFF6137 at 39.047 kb on - strand, within GFF6137 at 39.220 kb on + strand, within GFF6137 at 39.220 kb on + strand, within GFF6137 at 39.220 kb on + strand, within GFF6137 at 39.220 kb on + strand, within GFF6137 at 39.221 kb on - strand, within GFF6137
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 36,744 - GFF6135 0.53 +0.7 36,872 + GFF6135 0.65 -0.6 36,872 + GFF6135 0.65 +1.0 36,872 + GFF6135 0.65 -0.1 36,873 - GFF6135 0.65 -1.1 36,873 - GFF6135 0.65 +0.3 36,873 - GFF6135 0.65 -0.3 37,306 + -1.4 37,306 + +0.5 37,306 + +1.4 37,306 + -1.0 37,306 + -1.3 37,306 + -0.4 37,307 - -0.2 37,307 - -0.3 37,307 - +1.1 37,307 - -0.0 37,307 - +0.0 37,307 - -1.6 37,307 - -0.4 37,307 - -0.4 37,307 - -0.4 37,307 - -1.3 37,307 - -0.4 37,307 - -0.0 37,307 - -0.3 37,310 + +0.2 37,310 + -1.0 37,310 + +0.6 37,310 + +0.5 37,310 + -0.7 37,311 - -1.3 37,321 - -0.2 37,329 - -1.4 37,329 - -0.4 37,339 + -0.4 37,340 - -0.2 37,388 - +1.0 37,407 + +0.0 37,407 + +1.8 37,407 + -0.1 37,408 - +0.4 37,419 + +0.2 37,420 - -0.2 37,435 + +0.3 37,435 + +0.2 37,436 - -1.0 37,436 - -0.6 37,436 - -0.1 37,436 - -0.4 37,437 + -0.0 37,438 - -0.3 37,438 - -2.3 37,497 + -0.8 37,497 + +0.2 37,497 + -0.1 37,497 + -1.0 37,497 + -0.0 37,497 + +0.1 37,498 - -2.1 37,498 - +0.9 37,498 - -1.6 37,498 - +0.3 37,498 - -1.3 37,498 - -0.3 37,790 + GFF6136 0.27 -0.9 37,791 - GFF6136 0.27 +0.6 37,791 - GFF6136 0.27 -0.4 37,793 + GFF6136 0.27 -0.4 37,793 + GFF6136 0.27 +0.2 37,793 + GFF6136 0.27 +0.6 37,793 + GFF6136 0.27 -0.3 37,793 + GFF6136 0.27 -0.6 37,793 + GFF6136 0.27 -0.2 37,793 + GFF6136 0.27 +1.3 37,794 - GFF6136 0.27 +0.4 37,794 - GFF6136 0.27 -0.4 37,794 - GFF6136 0.27 -0.8 37,794 - GFF6136 0.27 +0.2 37,794 - GFF6136 0.27 +0.6 37,794 - GFF6136 0.27 +0.0 37,880 + GFF6136 0.35 +0.5 37,881 - GFF6136 0.35 +0.3 37,922 + GFF6136 0.39 +0.3 37,922 + GFF6136 0.39 -0.4 37,922 + GFF6136 0.39 -1.3 37,922 + GFF6136 0.39 +0.4 37,923 - GFF6136 0.39 +0.7 37,923 - GFF6136 0.39 +0.5 37,923 - GFF6136 0.39 -0.4 37,923 - GFF6136 0.39 -0.1 37,977 - GFF6136 0.44 +0.4 38,103 - GFF6136 0.55 -1.8 38,103 - GFF6136 0.55 +0.7 38,103 - GFF6136 0.55 +0.1 38,103 - GFF6136 0.55 -0.6 38,103 - GFF6136 0.55 -0.1 38,192 + GFF6136 0.64 -1.3 38,192 + GFF6136 0.64 -0.3 38,192 + GFF6136 0.64 -0.1 38,192 + GFF6136 0.64 -1.3 38,193 - GFF6136 0.64 -0.0 38,193 - GFF6136 0.64 +0.1 38,195 + GFF6136 0.64 -0.2 38,195 + GFF6136 0.64 +0.3 38,195 + GFF6136 0.64 -0.2 38,195 + GFF6136 0.64 -1.0 38,195 + GFF6136 0.64 +0.5 38,195 + GFF6136 0.64 -1.1 38,195 + GFF6136 0.64 -0.0 38,195 + GFF6136 0.64 +1.3 38,196 - GFF6136 0.64 +2.9 38,196 - GFF6136 0.64 -0.2 38,196 - GFF6136 0.64 +1.1 38,196 - GFF6136 0.64 -0.5 38,196 - GFF6136 0.64 +1.3 38,196 - GFF6136 0.64 +0.2 38,196 - GFF6136 0.64 -0.9 38,196 - GFF6136 0.64 -1.1 38,198 + GFF6136 0.64 +0.0 38,198 + GFF6136 0.64 +0.6 38,198 + GFF6136 0.64 +0.1 38,198 + GFF6136 0.64 +0.3 38,199 - GFF6136 0.64 +0.8 38,199 - GFF6136 0.64 -0.2 38,199 - GFF6136 0.64 -0.1 38,199 - GFF6136 0.64 -0.6 38,201 + GFF6136 0.65 -0.4 38,202 - GFF6136 0.65 -0.6 38,337 - GFF6136 0.77 -0.6 38,337 - GFF6136 0.77 +0.4 38,337 - GFF6136 0.77 +1.4 38,345 + GFF6136 0.78 +0.3 38,345 + GFF6136 0.78 -0.4 38,346 - GFF6136 0.78 -1.8 38,346 - GFF6136 0.78 +0.4 38,346 - GFF6136 0.78 +0.6 38,346 - GFF6136 0.78 +0.1 38,346 - GFF6136 0.78 -0.8 38,346 - GFF6136 0.78 +1.6 38,561 + -0.2 38,561 + -0.3 38,561 + -0.3 38,562 - -0.1 38,562 - +0.2 38,562 - -3.0 38,562 - -1.0 38,562 - +0.3 38,562 - -0.9 38,562 - -0.3 38,992 + GFF6137 0.18 +0.0 38,992 + GFF6137 0.18 -0.0 38,993 - GFF6137 0.18 -0.4 39,046 + GFF6137 0.21 -1.0 39,046 + GFF6137 0.21 +0.5 39,046 + GFF6137 0.21 -1.3 39,046 + GFF6137 0.21 -1.3 39,046 + GFF6137 0.21 -0.9 39,047 - GFF6137 0.21 -0.4 39,220 + GFF6137 0.31 +0.6 39,220 + GFF6137 0.31 +0.0 39,220 + GFF6137 0.31 -1.0 39,220 + GFF6137 0.31 -0.4 39,221 - GFF6137 0.31 -0.2
Or see this region's nucleotide sequence