Strain Fitness in Variovorax sp. SCN45 around GFF6087

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
147,750	+				-0.0
147,750	+				+0.3
147,750	+				+0.5
147,838	+				+0.1
147,839	-				-0.1
147,839	-				+0.1
147,839	-				-0.1
147,839	-				-0.1
147,923	+		GFF6086	0.13	-0.6
147,923	+		GFF6086	0.13	-0.2
147,924	-		GFF6086	0.13	-0.4
147,924	-		GFF6086	0.13	+0.1
147,924	-		GFF6086	0.13	-0.2
147,924	-		GFF6086	0.13	-0.1
148,020	-		GFF6086	0.25	-1.3
148,322	+		GFF6086	0.60	+0.2
148,322	+		GFF6086	0.60	-1.1
148,322	+		GFF6086	0.60	+0.1
148,322	+		GFF6086	0.60	+1.0
148,323	-		GFF6086	0.60	-0.4
148,323	-		GFF6086	0.60	-1.5
148,323	-		GFF6086	0.60	-1.4
148,323	-		GFF6086	0.60	-0.4
148,643	+				+0.8
148,643	+				-0.7
148,644	-				+0.2
148,705	+				-0.3
148,706	-				-0.2
148,715	+		GFF6087	0.11	-0.4
148,716	-		GFF6087	0.11	-0.2
149,021	+		GFF6087	0.56	-0.4
149,021	+		GFF6087	0.56	+0.6
149,021	+		GFF6087	0.56	-1.4
149,022	-		GFF6087	0.56	+0.5
149,022	-		GFF6087	0.56	-0.2
149,039	+		GFF6087	0.59	-2.7
149,040	-		GFF6087	0.59	+1.6
149,040	-		GFF6087	0.59	-0.9
149,162	+		GFF6087	0.77	-4.2
149,162	+		GFF6087	0.77	-2.6
149,162	+		GFF6087	0.77	+1.1
149,162	+		GFF6087	0.77	+0.3
149,162	+		GFF6087	0.77	-0.7
149,163	-		GFF6087	0.77	-2.0
149,163	-		GFF6087	0.77	-0.8
149,163	-		GFF6087	0.77	-0.3
149,163	-		GFF6087	0.77	-0.8
149,163	-		GFF6087	0.77	-0.7
149,163	-		GFF6087	0.77	-0.5
149,165	+		GFF6087	0.77	-1.7
149,165	+		GFF6087	0.77	-1.9
149,166	-		GFF6087	0.78	-1.4
149,166	-		GFF6087	0.78	-0.3
149,166	-		GFF6087	0.78	-0.9
149,166	-		GFF6087	0.78	-1.2
149,171	+		GFF6087	0.78	+0.9
149,171	+		GFF6087	0.78	-0.7
149,171	+		GFF6087	0.78	-0.7
149,172	-		GFF6087	0.79	-1.0
149,172	-		GFF6087	0.79	-1.8
149,291	+				-1.4
149,292	-				+0.6
149,292	-				-2.3
149,337	+				-0.3
149,337	+				-1.0
149,337	+				-0.9
149,337	+				-1.4
149,337	+				+0.2
149,337	+				-2.2
149,337	+				-0.6
149,338	-				+0.7
149,338	-				-0.0
149,338	-				-3.4
149,338	-				-0.4
149,338	-				-1.5
149,512	+		GFF6088	0.21	+0.2
149,512	+		GFF6088	0.21	-0.4
149,513	-		GFF6088	0.21	+0.2
149,513	-		GFF6088	0.21	-1.5
149,877	+		GFF6088	0.82	-0.9
149,877	+		GFF6088	0.82	-0.7
149,877	+		GFF6088	0.82	-0.6
149,877	+		GFF6088	0.82	-0.6
149,877	+		GFF6088	0.82	-0.6
149,877	+		GFF6088	0.82	-1.3
149,877	+		GFF6088	0.82	-0.3
149,877	+		GFF6088	0.82	-0.9
149,878	-		GFF6088	0.82	-0.3
149,878	-		GFF6088	0.82	+0.2
149,878	-		GFF6088	0.82	+0.3
149,878	-		GFF6088	0.82	-0.2
149,878	-		GFF6088	0.82	-1.4
149,878	-		GFF6088	0.82	-1.2
149,878	-		GFF6088	0.82	+0.1
149,878	-		GFF6088	0.82	+0.1
149,878	-		GFF6088	0.82	+0.5
149,878	-		GFF6088	0.82	-0.7
149,878	-		GFF6088	0.82	+0.5
149,878	-		GFF6088	0.82	+0.5
149,878	-		GFF6088	0.82	+0.0
149,878	-		GFF6088	0.82	+0.6
149,878	-		GFF6088	0.82	-0.7
149,881	+		GFF6088	0.82	-0.6
149,881	+		GFF6088	0.82	-2.2
149,881	+		GFF6088	0.82	-0.2
149,881	+		GFF6088	0.82	-0.0
149,881	+		GFF6088	0.82	+0.1
149,881	+		GFF6088	0.82	+1.2
149,882	-		GFF6088	0.82	+0.4
149,935	+				+1.4
149,935	+				-1.2
149,936	-				-0.7
149,936	-				+0.4
149,936	-				+2.6
149,977	+				-0.4
149,977	+				-1.0
149,977	+				+0.8
149,978	-				-0.4
149,978	-				+0.5
149,978	-				-0.7
149,978	-				-0.7
150,043	+				-0.6
150,043	+				-1.3
150,043	+				-0.1
150,044	-				-0.2
150,044	-				-0.3
150,044	-				-0.2
150,044	-				-0.3
150,046	+				-0.7
150,046	+				-0.3
150,046	+				-0.5
150,046	+				-0.1
150,046	+				-1.9
150,046	+				-2.2
150,046	+				-0.4
150,047	-				-0.8
150,047	-				-0.4
150,047	-				-0.6
150,153	+				-0.3
150,153	+				+0.8
150,154	-				-0.4
150,154	-				+0.1
150,154	-				-1.0
150,154	-				-0.0
150,154	-				+1.9
150,178	-				-1.4
150,178	-				-0.4