Strain Fitness in Variovorax sp. SCN45 around GFF5967

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5966 and GFF5967 are separated by 53 nucleotidesGFF5967 and GFF5968 are separated by 6 nucleotides GFF5966 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 19,099 to 21,348 GFF5966 GFF5967 - Beta-propeller domains of methanol dehydrogenase type, at 21,402 to 22,817 GFF5967 GFF5968 - no description, at 22,824 to 23,717 GFF5968 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 20.452 kb on + strand, within GFF5966at 20.452 kb on + strand, within GFF5966at 20.452 kb on + strand, within GFF5966at 20.453 kb on - strand, within GFF5966at 20.455 kb on + strand, within GFF5966at 20.456 kb on - strand, within GFF5966at 20.543 kb on - strand, within GFF5966at 21.534 kb on + strandat 21.535 kb on - strandat 22.296 kb on + strand, within GFF5967at 22.296 kb on + strand, within GFF5967at 22.297 kb on - strand, within GFF5967at 22.297 kb on - strand, within GFF5967at 22.308 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.392 kb on + strand, within GFF5967at 22.392 kb on + strand, within GFF5967at 22.815 kb on + strandat 22.815 kb on + strandat 22.816 kb on - strandat 22.816 kb on - strandat 22.825 kb on + strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.852 kb on + strandat 22.852 kb on + strandat 22.853 kb on - strandat 22.853 kb on - strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.901 kb on - strandat 22.901 kb on - strandat 23.200 kb on + strand, within GFF5968at 23.200 kb on + strand, within GFF5968at 23.201 kb on - strand, within GFF5968at 23.201 kb on - strand, within GFF5968at 23.201 kb on - strand, within GFF5968at 23.407 kb on + strand, within GFF5968at 23.407 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.629 kb on - strandat 23.629 kb on - strandat 23.629 kb on - strandat 23.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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20,452 + GFF5966 0.60 -0.8
20,452 + GFF5966 0.60 -1.0
20,452 + GFF5966 0.60 +0.4
20,453 - GFF5966 0.60 -1.2
20,455 + GFF5966 0.60 +0.4
20,456 - GFF5966 0.60 +0.7
20,543 - GFF5966 0.64 +0.7
21,534 + +0.1
21,535 - +0.3
22,296 + GFF5967 0.63 -0.8
22,296 + GFF5967 0.63 -0.4
22,297 - GFF5967 0.63 +0.6
22,297 - GFF5967 0.63 -0.3
22,308 + GFF5967 0.64 +0.2
22,338 + GFF5967 0.66 -1.0
22,338 + GFF5967 0.66 +0.5
22,338 + GFF5967 0.66 +1.3
22,338 + GFF5967 0.66 +1.9
22,338 + GFF5967 0.66 +0.0
22,339 - GFF5967 0.66 -0.3
22,339 - GFF5967 0.66 -0.6
22,339 - GFF5967 0.66 +0.3
22,339 - GFF5967 0.66 +0.4
22,339 - GFF5967 0.66 +0.3
22,392 + GFF5967 0.70 +0.1
22,392 + GFF5967 0.70 -0.1
22,815 + -0.5
22,815 + -0.0
22,816 - -1.0
22,816 - +0.5
22,825 + -0.6
22,826 - -2.5
22,826 - +0.1
22,826 - +0.6
22,826 - +0.6
22,826 - -0.0
22,826 - +0.2
22,826 - +0.6
22,852 + +1.2
22,852 + +0.3
22,853 - +0.1
22,853 - -0.3
22,900 + -0.1
22,900 + +0.1
22,900 + -0.1
22,900 + -0.1
22,900 + -0.4
22,901 - +0.9
22,901 - +0.1
23,200 + GFF5968 0.42 +0.1
23,200 + GFF5968 0.42 -0.4
23,201 - GFF5968 0.42 -0.8
23,201 - GFF5968 0.42 -0.4
23,201 - GFF5968 0.42 -0.4
23,407 + GFF5968 0.65 -0.0
23,407 + GFF5968 0.65 -1.4
23,410 + GFF5968 0.66 +0.8
23,410 + GFF5968 0.66 -0.7
23,410 + GFF5968 0.66 +0.1
23,410 + GFF5968 0.66 -1.1
23,410 + GFF5968 0.66 -0.2
23,411 - GFF5968 0.66 +0.4
23,411 - GFF5968 0.66 -0.2
23,411 - GFF5968 0.66 -1.8
23,411 - GFF5968 0.66 -0.4
23,411 - GFF5968 0.66 -1.4
23,411 - GFF5968 0.66 +0.1
23,628 + -0.9
23,628 + -0.4
23,628 + +1.1
23,628 + -0.3
23,628 + -0.8
23,628 + +0.6
23,629 - -0.5
23,629 - +0.3
23,629 - -0.1
23,629 - -1.2

Or see this region's nucleotide sequence