Strain Fitness in Variovorax sp. SCN45 around GFF5727

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5725 and GFF5726 are separated by 4 nucleotidesGFF5726 and GFF5727 are separated by 7 nucleotidesGFF5727 and GFF5728 are separated by 104 nucleotides GFF5725 - Methyl-accepting chemotaxis sensor/transducer protein, at 94,017 to 95,576 GFF5725 GFF5726 - no description, at 95,581 to 95,868 GFF5726 GFF5727 - Methyl-accepting chemotaxis sensor/transducer protein, at 95,876 to 97,612 GFF5727 GFF5728 - Methyl-accepting chemotaxis sensor/transducer protein, at 97,717 to 99,282 GFF5728 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2 3at 95.127 kb on - strand, within GFF5725at 96.431 kb on + strand, within GFF5727at 96.431 kb on + strand, within GFF5727at 96.432 kb on - strand, within GFF5727at 97.616 kb on + strandat 98.060 kb on - strand, within GFF5728at 98.060 kb on - strand, within GFF5728at 98.192 kb on - strand, within GFF5728at 98.270 kb on - strand, within GFF5728at 98.587 kb on - strand, within GFF5728

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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95,127 - GFF5725 0.71 -1.2
96,431 + GFF5727 0.32 -1.6
96,431 + GFF5727 0.32 -0.3
96,432 - GFF5727 0.32 +0.0
97,616 + -0.6
98,060 - GFF5728 0.22 -0.6
98,060 - GFF5728 0.22 -1.8
98,192 - GFF5728 0.30 -0.6
98,270 - GFF5728 0.35 +3.3
98,587 - GFF5728 0.56 -0.0

Or see this region's nucleotide sequence