Strain Fitness in Variovorax sp. SCN45 around GFF5632

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
9,083	+		GFF5630	0.23	-0.1
9,083	+		GFF5630	0.23	+0.1
9,084	-		GFF5630	0.23	-1.5
9,084	-		GFF5630	0.23	+0.6
9,176	+		GFF5630	0.39	-0.3
9,176	+		GFF5630	0.39	-0.1
9,176	+		GFF5630	0.39	-0.3
9,176	+		GFF5630	0.39	-0.3
9,176	+		GFF5630	0.39	+1.7
9,177	-		GFF5630	0.39	-1.2
9,177	-		GFF5630	0.39	-0.5
9,177	-		GFF5630	0.39	+0.0
9,177	-		GFF5630	0.39	+0.1
9,177	-		GFF5630	0.39	+0.5
9,177	-		GFF5630	0.39	-0.2
9,177	-		GFF5630	0.39	-0.6
9,177	-		GFF5630	0.39	-1.1
9,177	-		GFF5630	0.39	+0.9
9,177	-		GFF5630	0.39	+0.8
9,177	-		GFF5630	0.39	-0.3
9,266	+		GFF5630	0.55	+1.3
9,266	+		GFF5630	0.55	-0.6
9,266	+		GFF5630	0.55	+0.0
9,266	+		GFF5630	0.55	-0.6
9,266	+		GFF5630	0.55	-0.6
9,266	+		GFF5630	0.55	+0.9
9,266	+		GFF5630	0.55	-1.0
9,266	+		GFF5630	0.55	-0.7
9,266	+		GFF5630	0.55	-0.6
9,266	+		GFF5630	0.55	-0.6
9,267	-		GFF5630	0.55	-0.2
9,267	-		GFF5630	0.55	-0.3
9,267	-		GFF5630	0.55	-0.1
9,267	-		GFF5630	0.55	+0.0
9,267	-		GFF5630	0.55	-2.0
9,267	-		GFF5630	0.55	-0.8
9,267	-		GFF5630	0.55	+0.1
9,267	-		GFF5630	0.55	-0.9
9,267	-		GFF5630	0.55	-0.8
9,563	+				-0.5
9,563	+				-0.7
9,564	-				+0.2
9,564	-				+1.1
9,564	-				-1.4
9,564	-				-0.3
9,625	+				+0.5
9,625	+				-0.9
9,626	-				-1.3
9,626	-				-0.6
9,674	+				+0.2
9,675	-				-1.1
9,779	+		GFF5631	0.40	-0.4
9,779	+		GFF5631	0.40	-0.1
9,780	-		GFF5631	0.40	-0.5
10,159	+		GFF5632	0.35	+0.8
10,159	+		GFF5632	0.35	-0.3
10,159	+		GFF5632	0.35	-0.6
10,159	+		GFF5632	0.35	+1.7
10,160	-		GFF5632	0.35	+0.0
10,160	-		GFF5632	0.35	+1.9
10,160	-		GFF5632	0.35	+0.1
10,160	-		GFF5632	0.35	-0.4
10,381	+		GFF5632	0.80	-0.3
10,381	+		GFF5632	0.80	+0.1
10,381	+		GFF5632	0.80	-1.5
10,381	+		GFF5632	0.80	-0.6
10,381	+		GFF5632	0.80	+2.2
10,381	+		GFF5632	0.80	-0.8
10,381	+		GFF5632	0.80	+0.1
10,381	+		GFF5632	0.80	-0.3
10,381	+		GFF5632	0.80	-0.7
10,382	-		GFF5632	0.80	+0.1
10,382	-		GFF5632	0.80	-0.6
10,382	-		GFF5632	0.80	+0.5
10,382	-		GFF5632	0.80	-1.6
10,382	-		GFF5632	0.80	+0.3
10,382	-		GFF5632	0.80	+1.0
10,382	-		GFF5632	0.80	+0.9
10,382	-		GFF5632	0.80	+0.0
10,621	+		GFF5633	0.26	+1.1
11,142	+		GFF5634	0.12	+0.3
11,142	+		GFF5634	0.12	-0.3
11,143	-		GFF5634	0.13	+1.1
11,143	-		GFF5634	0.13	-0.3
11,143	-		GFF5634	0.13	-1.1
11,143	-		GFF5634	0.13	+1.5
11,143	-		GFF5634	0.13	-0.4
11,143	-		GFF5634	0.13	-0.6
11,162	+		GFF5634	0.24	-0.4
11,162	+		GFF5634	0.24	-0.8
11,162	+		GFF5634	0.24	-0.1
11,163	-		GFF5634	0.24	+0.3
11,163	-		GFF5634	0.24	+1.0
11,163	-		GFF5634	0.24	-0.1
11,381	+				-1.1
11,381	+				-0.6
11,381	+				-0.1
11,381	+				-1.9
11,381	+				-0.1
11,381	+				+0.2
11,382	-				-0.5
11,382	-				-0.5
11,382	-				-0.9
11,382	-				-1.0
11,382	-				-1.6
11,382	-				-2.0
11,382	-				+0.6
11,382	-				-0.1
11,383	+				+1.4
11,393	+				+0.1
11,393	+				-0.2
11,393	+				-2.2
11,393	+				-2.0
11,393	+				+1.9
11,393	+				-0.2
11,393	+				-0.9
11,393	+				-0.4
11,393	+				+0.0
11,393	+				-0.6
11,394	-				-0.7
11,394	-				-0.7
11,395	+				-0.9
11,395	+				-0.4
11,395	+				+0.4
11,395	+				+0.9
11,395	+				-1.0
11,395	+				+0.1
11,395	+				+1.3
11,395	+				-1.2
11,396	-				-0.8
11,396	-				-0.2
11,396	-				-1.6
11,396	-				-1.2
11,396	-				-2.0
11,434	+				-1.3
11,434	+				-0.3
11,435	-				-0.2
11,448	+				+0.1
11,448	+				-0.8
11,449	-				-1.3
11,449	-				-1.3
11,449	-				+1.7
11,449	-				+0.4
11,449	-				-1.0
11,464	-				+1.4
11,464	-				+1.7