Strain Fitness in Variovorax sp. SCN45 around GFF5537

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5535 and GFF5536 are separated by 145 nucleotidesGFF5536 and GFF5537 overlap by 4 nucleotidesGFF5537 and GFF5538 are separated by 11 nucleotides GFF5535 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17), at 163,695 to 164,738 GFF5535 GFF5536 - no description, at 164,884 to 165,558 GFF5536 GFF5537 - Cell division inhibitor SulA, at 165,555 to 167,051 GFF5537 GFF5538 - ATP-dependent DNA helicase RecG (EC 3.6.4.12), at 167,063 to 169,195 GFF5538 Position (kb) 165 166 167 168Strain fitness (log2 ratio) -2 -1 0 1at 164.852 kb on - strandat 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.038 kb on - strand, within GFF5536at 165.038 kb on - strand, within GFF5536at 165.130 kb on + strand, within GFF5536at 165.131 kb on - strand, within GFF5536at 165.131 kb on - strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.167 kb on - strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.208 kb on + strand, within GFF5536at 165.208 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.361 kb on + strand, within GFF5536at 165.362 kb on - strand, within GFF5536at 165.362 kb on - strand, within GFF5536at 165.495 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.715 kb on - strand, within GFF5537at 165.724 kb on + strand, within GFF5537at 166.470 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.474 kb on - strand, within GFF5537at 166.474 kb on - strand, within GFF5537at 167.049 kb on + strandat 167.050 kb on - strandat 167.050 kb on - strandat 167.157 kb on + strandat 167.157 kb on + strandat 167.157 kb on + strandat 167.157 kb on + strandat 167.158 kb on - strandat 167.158 kb on - strandat 167.158 kb on - strandat 167.158 kb on - strandat 167.210 kb on + strandat 167.210 kb on + strandat 167.210 kb on + strandat 167.210 kb on + strandat 167.211 kb on - strandat 167.211 kb on - strandat 167.225 kb on + strandat 167.226 kb on - strandat 167.226 kb on - strandat 167.318 kb on + strand, within GFF5538at 167.318 kb on + strand, within GFF5538at 167.319 kb on - strand, within GFF5538at 167.394 kb on - strand, within GFF5538at 167.537 kb on + strand, within GFF5538at 167.537 kb on + strand, within GFF5538at 167.538 kb on - strand, within GFF5538at 167.538 kb on - strand, within GFF5538at 167.538 kb on - strand, within GFF5538at 167.684 kb on + strand, within GFF5538at 167.685 kb on - strand, within GFF5538

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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164,852 - +1.2
165,037 + GFF5536 0.23 -1.3
165,037 + GFF5536 0.23 -0.1
165,037 + GFF5536 0.23 -0.7
165,037 + GFF5536 0.23 +0.9
165,037 + GFF5536 0.23 +1.6
165,037 + GFF5536 0.23 -1.2
165,038 - GFF5536 0.23 -0.1
165,038 - GFF5536 0.23 +0.5
165,130 + GFF5536 0.36 -0.1
165,131 - GFF5536 0.37 -0.7
165,131 - GFF5536 0.37 -0.6
165,166 + GFF5536 0.42 -1.5
165,166 + GFF5536 0.42 -0.1
165,166 + GFF5536 0.42 -0.7
165,166 + GFF5536 0.42 -0.5
165,167 - GFF5536 0.42 -0.2
165,193 + GFF5536 0.46 -0.4
165,193 + GFF5536 0.46 -0.2
165,193 + GFF5536 0.46 -1.8
165,193 + GFF5536 0.46 -0.3
165,193 + GFF5536 0.46 -0.0
165,193 + GFF5536 0.46 +0.4
165,193 + GFF5536 0.46 -0.9
165,193 + GFF5536 0.46 -0.9
165,193 + GFF5536 0.46 -1.5
165,193 + GFF5536 0.46 +0.2
165,193 + GFF5536 0.46 +0.6
165,193 + GFF5536 0.46 -0.4
165,193 + GFF5536 0.46 +0.2
165,194 - GFF5536 0.46 -0.3
165,194 - GFF5536 0.46 -0.2
165,194 - GFF5536 0.46 -0.1
165,208 + GFF5536 0.48 -2.3
165,208 + GFF5536 0.48 +0.7
165,283 + GFF5536 0.59 +1.7
165,283 + GFF5536 0.59 +0.5
165,283 + GFF5536 0.59 -0.6
165,284 - GFF5536 0.59 +1.1
165,284 - GFF5536 0.59 -0.4
165,284 - GFF5536 0.59 +0.4
165,284 - GFF5536 0.59 +0.5
165,284 - GFF5536 0.59 -0.2
165,361 + GFF5536 0.71 -1.3
165,362 - GFF5536 0.71 -0.9
165,362 - GFF5536 0.71 +0.3
165,495 + +0.5
165,630 + -0.4
165,630 + -0.3
165,630 + -0.1
165,630 + +0.5
165,630 + -0.3
165,631 - -0.3
165,631 - -1.3
165,631 - -0.7
165,631 - -2.5
165,631 - -0.2
165,631 - -0.9
165,631 - -0.4
165,714 + GFF5537 0.11 +1.1
165,714 + GFF5537 0.11 -0.9
165,714 + GFF5537 0.11 -0.3
165,714 + GFF5537 0.11 +0.3
165,714 + GFF5537 0.11 +0.6
165,714 + GFF5537 0.11 -0.8
165,714 + GFF5537 0.11 +0.8
165,715 - GFF5537 0.11 -0.3
165,724 + GFF5537 0.11 -1.3
166,470 + GFF5537 0.61 -0.8
166,473 + GFF5537 0.61 -0.3
166,473 + GFF5537 0.61 +0.4
166,473 + GFF5537 0.61 -1.1
166,473 + GFF5537 0.61 -1.1
166,473 + GFF5537 0.61 +0.7
166,473 + GFF5537 0.61 +0.4
166,473 + GFF5537 0.61 +1.3
166,473 + GFF5537 0.61 +1.1
166,473 + GFF5537 0.61 -0.7
166,474 - GFF5537 0.61 +0.1
166,474 - GFF5537 0.61 -1.1
167,049 + -0.9
167,050 - +0.7
167,050 - -0.2
167,157 + -0.9
167,157 + -0.2
167,157 + -0.0
167,157 + -0.3
167,158 - +0.1
167,158 - -1.0
167,158 - -0.6
167,158 - -0.4
167,210 + -0.6
167,210 + -1.5
167,210 + -0.9
167,210 + -1.4
167,211 - +0.0
167,211 - -0.8
167,225 + -1.1
167,226 - -1.5
167,226 - -0.5
167,318 + GFF5538 0.12 -0.1
167,318 + GFF5538 0.12 +0.9
167,319 - GFF5538 0.12 -2.0
167,394 - GFF5538 0.16 -0.4
167,537 + GFF5538 0.22 -0.1
167,537 + GFF5538 0.22 +0.1
167,538 - GFF5538 0.22 -0.7
167,538 - GFF5538 0.22 -1.3
167,538 - GFF5538 0.22 +1.1
167,684 + GFF5538 0.29 -0.1
167,685 - GFF5538 0.29 +0.3

Or see this region's nucleotide sequence